Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 1.9e-186 656.4 535 100.0
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 3.3e-122 443.0 463 92.9
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 5.7e-122 442.2 261 88.9
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 2.6e-82 310.5 261 67.0
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 7.1e-72 275.8 259 59.8
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 3.0e-70 270.4 267 56.9
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 6.6e-70 269.2 273 54.2
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 2.1e-68 264.2 273 56.0
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 4.9e-65 253.1 260 55.8
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 8.4e-65 252.3 262 52.3
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 1.1e-64 251.9 271 55.7
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 1.4e-64 251.5 261 51.7
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 1.9e-64 251.1 262 51.9
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 2.4e-64 250.8 267 52.8
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 3.2e-64 250.4 265 52.5
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 4.2e-64 250.0 266 52.3
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 7.1e-64 249.2 264 54.5
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 7.1e-64 249.2 264 53.4
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 9.2e-64 248.8 270 54.1
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 1.2e-63 248.4 271 55.0
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 1.2e-63 248.4 264 55.7
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 1.3e-62 245.0 273 53.8
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 3.9e-62 243.4 267 53.6
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 6.6e-62 242.7 270 51.1
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 6.6e-62 242.7 267 50.9
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 8.7e-62 242.3 267 50.6
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 8.7e-62 242.3 267 53.9
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 1.1e-61 241.9 276 51.1
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 7.3e-61 239.2 269 54.6
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 6.2e-60 236.1 261 50.6
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 1.8e-59 234.6 268 51.5
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 2.4e-59 234.2 262 52.7
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 6.9e-59 232.6 269 50.2
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 2.6e-58 230.7 266 49.2
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 9.9e-58 228.8 261 48.7
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 1.3e-57 228.4 266 53.8
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 2.9e-57 227.3 212 56.1
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 2.9e-57 227.3 263 47.9
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 3.8e-57 226.9 264 51.1
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 8.4e-57 225.7 265 49.8
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 1.4e-56 224.9 265 49.4
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 1.9e-56 224.6 267 50.9
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 7.1e-56 222.6 229 53.3
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 2.7e-55 220.7 274 48.2
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 4.6e-55 219.9 207 57.0
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 6.6e-54 216.1 261 49.0
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 3.3e-53 213.8 270 48.9
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 1.3e-52 211.8 280 47.5
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 2.8e-52 210.7 265 49.1
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 4.0e-51 206.8 262 46.2
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 3.4e-50 203.8 173 62.4
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 3.8e-49 200.3 265 46.0
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 8.4e-49 199.1 229 47.6
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 3.2e-48 197.2 270 47.4
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 3.5e-47 193.7 271 45.8
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 1.0e-46 192.2 267 43.8
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 1.5e-45 188.3 152 61.8
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 1.5e-45 188.3 265 43.8
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 1.3e-44 185.3 265 44.2
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 2.0e-42 177.9 238 45.8
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 1.3e-41 175.3 146 62.3
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 4.9e-41 173.3 193 51.3
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 6.4e-41 172.9 224 45.5
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 4.2e-40 170.2 242 41.3
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 7.1e-40 169.5 188 51.6
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 3.3e-37 160.6 283 41.3
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 7.4e-37 159.5 279 39.4
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 3.1e-35 154.1 205 49.3
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 3.8e-33 147.1 235 41.3
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 4.9e-33 146.7 232 38.8
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 1.1e-32 145.6 264 38.6
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 2.5e-32 144.4 272 41.5
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 1.2e-31 142.1 238 39.1
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 6.0e-31 139.8 151 47.7
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 1.1e-29 135.6 151 46.4
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 1.9e-29 134.8 151 46.4
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 9.7e-29 132.5 112 58.0
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 3.7e-28 130.6 192 43.2
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 3.1e-27 127.5 212 40.1
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 6.9e-27 126.3 215 43.3
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 1.5e-26 125.2 192 41.7
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 3.8e-25 120.6 190 41.6
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 6.5e-25 119.8 226 37.6
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 5.5e-24 116.7 123 53.7
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 4.6e-23 113.6 112 56.2
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 4.3e-21 107.1 105 49.5
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 9.7e-21 105.9 265 35.5
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 1.3e-20 105.5 202 38.1
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 1.5e-13 82.0 80 47.5
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 5.7e-13 80.1 238 30.3
AUR62000391 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.2e-07 62.4 131 27.5
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 1.2e-07 62.4 105 34.3
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 2.1e-07 61.6 85 36.5
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 3.6e-07 60.8 188 26.1
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 4.7e-07 60.5 135 29.6
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 6.1e-07 60.1 122 27.9
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 6.1e-07 60.1 125 28.8
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 8.0e-07 59.7 122 27.9
ECA238G1378 Erigeron canadensis HOM05D007700 ORTHO05D009669 8.0e-07 59.7 41 75.6
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 8.0e-07 59.7 122 28.7
Sp3g31030 Schrenkiella parvula HOM05D007700 ORTHO05D009669 8.0e-07 59.7 41 75.6
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 1.4e-06 58.9 142 26.8
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 1.8e-06 58.5 115 25.2
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 1.8e-06 58.5 85 35.3
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 1.8e-06 58.5 135 29.6
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 2.3e-06 58.2 188 25.5
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 2.3e-06 58.2 145 28.3
Rhsim02G0073500 Rhododendron simsii HOM05D007128 ORTHO05D009059 2.3e-06 58.2 111 32.4
SMO196G0165 Selaginella moellendorffii HOM05D005973 ORTHO05D007285 2.3e-06 58.2 140 27.1
CSS0049050 Camellia sinensis var. sinensis HOM05D007700 ORTHO05D009669 3.0e-06 57.8 41 73.2
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 3.0e-06 57.8 169 21.9
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 3.0e-06 57.8 105 29.5
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 3.9e-06 57.4 205 26.3
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 5.2e-06 57.0 122 27.9
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 5.2e-06 57.0 134 28.4
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 5.2e-06 57.0 221 24.9
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 5.2e-06 57.0 135 28.1
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 6.7e-06 56.6 142 26.1
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 6.7e-06 56.6 204 24.5
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 6.7e-06 56.6 92 30.4
Psat6g065880 Pisum sativum HOM05D006895 ORTHO05D008605 6.7e-06 56.6 230 26.1
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 6.7e-06 56.6 83 33.7
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 8.8e-06 56.2 136 24.3
Psat6g065920 Pisum sativum HOM05D006895 ORTHO05D008605 8.8e-06 56.2 230 26.1
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 8.8e-06 56.2 83 34.9


User provided reference genes

Program Settings