Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 0.0e+00 1697.9 1032 100.0
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 0.0e+00 1427.5 1057 86.6
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 0.0e+00 1338.6 1039 84.2
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 0.0e+00 1297.0 1058 80.6
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 8.0e-290 1000.7 1187 52.0
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 3.0e-276 955.7 1062 60.6
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.6e-269 933.3 1063 65.0
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.6e-269 933.3 1063 65.0
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 2.3e-268 929.5 1062 65.2
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 1.5e-267 926.8 1062 64.8
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 3.3e-267 925.6 1072 63.2
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 4.7e-266 921.8 1068 64.0
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 1.8e-265 919.8 1061 63.8
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 5.2e-265 918.3 1117 62.5
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 9.9e-264 914.1 1059 64.7
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 1.9e-262 909.8 1125 61.7
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 1.9e-262 909.8 1058 64.1
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 2.4e-262 909.4 1042 64.6
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 5.4e-262 908.3 1066 64.4
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.2e-261 907.1 1125 61.6
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.7e-261 906.0 1125 61.5
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 1.3e-260 903.7 1109 61.6
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 1.5e-259 900.2 1121 60.7
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 5.6e-259 898.3 1113 62.2
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 9.6e-259 897.5 1068 63.7
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 1.2e-258 897.1 1073 63.3
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.2e-258 897.1 1061 64.2
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 1.6e-258 896.7 1126 60.9
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 1.1e-257 894.0 1047 63.2
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 6.8e-257 891.3 1075 63.2
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 2.6e-256 889.4 1063 63.7
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 1.3e-255 887.1 1101 61.9
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 2.2e-255 886.3 1058 62.7
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 4.9e-255 885.2 1119 61.2
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 9.3e-254 880.9 1072 61.8
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 3.9e-252 875.5 1136 59.9
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 8.7e-252 874.4 1072 61.9
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 1.5e-251 873.6 1073 62.2
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 4.3e-251 872.1 1096 61.1
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 1.3e-250 870.5 1062 61.9
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 2.8e-250 869.4 1063 62.4
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 1.8e-249 866.7 1121 60.6
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 2.6e-248 862.8 1057 62.9
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.3e-247 860.5 1088 61.3
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 3.8e-247 859.0 1072 61.3
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 3.8e-247 859.0 1117 59.9
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 4.2e-246 855.5 1060 62.1
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 3.3e-243 845.9 1070 61.0
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 9.6e-243 844.3 1063 61.9
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 2.8e-242 842.8 1047 62.0
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 3.6e-242 842.4 912 69.2
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 4.8e-242 842.0 1034 63.2
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 4.0e-241 839.0 1069 61.3
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 5.3e-241 838.6 1061 62.3
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 5.3e-241 838.6 1121 59.3
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 1.5e-240 837.0 1072 60.3
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 2.6e-240 836.3 1058 60.8
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 9.9e-240 834.3 1058 60.7
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 1.3e-239 833.9 1096 57.6
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 3.8e-239 832.4 1062 59.8
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 3.2e-238 829.3 1053 61.1
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 7.1e-238 828.2 1096 59.1
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 9.3e-238 827.8 1096 59.1
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 1.1e-235 820.8 1070 57.3
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 4.3e-235 818.9 1123 58.2
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 4.3e-235 818.9 1059 59.9
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 5.6e-235 818.5 1059 60.4
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.1e-234 816.6 1080 59.1
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 1.4e-233 813.9 1061 59.7
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 1.5e-232 810.4 1090 56.1
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.6e-232 809.7 1095 58.6
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 2.9e-231 806.2 1079 56.6
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 3.8e-231 805.8 1059 60.2
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 4.9e-231 805.4 1059 59.1
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 2.5e-230 803.1 1140 42.2
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 3.2e-230 802.7 1060 59.9
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 5.5e-230 802.0 485 79.0
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.2e-229 800.8 1079 56.4
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 6.0e-229 798.5 1095 56.1
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 6.0e-229 798.5 1070 56.1
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 2.3e-228 796.6 1068 57.0
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 1.5e-227 793.9 1060 53.4
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 1.5e-227 793.9 1095 57.7
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 2.5e-227 793.1 1066 60.1
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 1.4e-225 787.3 492 76.2
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 1.3e-223 780.8 1059 59.8
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 2.9e-223 779.6 1077 55.4
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 8.5e-223 778.1 491 74.5
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.4e-222 777.3 492 75.6
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 1.4e-217 760.8 1061 58.1
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 6.9e-217 758.4 1061 57.7
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 5.0e-215 752.3 1071 54.6
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 1.2e-213 747.7 1038 55.9
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 2.1e-213 746.9 948 63.2
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.6e-213 746.1 840 55.6
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 1.1e-206 724.5 489 71.0
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 9.4e-206 721.5 993 54.8
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 3.3e-195 686.4 997 57.3
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 1.8e-180 637.5 1067 48.1
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 9.8e-179 631.7 1059 44.4
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.1e-177 628.2 482 63.1
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 1.0e-175 621.7 1053 52.1
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 3.5e-152 543.5 936 53.3
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 5.3e-132 476.5 855 44.6
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 2.0e-131 474.6 441 56.5
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 6.4e-130 469.5 483 50.3
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.7e-128 464.2 857 55.8
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 3.3e-118 430.6 253 78.7
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 6.7e-111 406.4 793 57.0
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 1.4e-108 398.7 853 35.4
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 3.8e-98 364.0 537 38.2
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 2.6e-94 351.3 307 59.3
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 4.1e-92 344.0 202 80.2
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 2.4e-84 318.2 852 33.8
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 1.2e-70 272.7 458 35.6
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 2.0e-67 261.9 714 44.1
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 3.3e-65 254.6 430 40.0
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 6.1e-64 250.4 269 53.9
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 6.6e-58 230.3 340 43.2
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 2.6e-46 191.8 355 40.6
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 5.4e-44 184.1 133 60.9
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 7.3e-41 173.7 99 76.8
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 4.7e-40 171.0 339 36.9
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.0e-38 165.6 93 87.1
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 4.4e-38 164.5 184 50.0
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 9.9e-38 163.3 130 61.5
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 1.7e-37 162.5 130 61.5
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.6e-35 156.0 93 79.6
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 8.1e-32 143.7 300 35.3
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.4e-30 137.9 75 80.0
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 9.9e-30 136.7 93 69.9
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.9e-29 134.4 112 60.7
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 7.1e-28 130.6 189 45.5
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 7.8e-27 127.1 81 79.0
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 2.1e-24 119.0 105 61.0
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 7.1e-20 104.0 129 45.0
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 1.7e-18 99.4 131 45.0
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 1.1e-09 70.1 123 39.8
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.6e-08 66.2 65 55.4
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 6.2e-08 64.3 74 55.4
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 1.8e-07 62.8 37 64.9
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 4.5e-06 58.2 69 39.1


User provided reference genes

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