Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 5.9e-197 690.6 341 100.0
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 1.4e-193 679.5 341 97.7
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 4.7e-170 601.3 339 85.8
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.2e-160 570.1 339 84.1
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 5.0e-140 501.5 334 73.7
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 6.2e-138 494.6 334 71.3
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 7.1e-134 481.1 334 69.2
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 6.0e-133 478.0 335 70.1
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.0e-132 477.2 334 71.6
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 1.3e-132 476.9 330 69.4
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.1e-131 473.8 333 69.4
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 5.6e-131 471.5 330 67.9
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.1e-130 469.5 328 71.3
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 2.3e-129 466.1 329 68.7
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.2e-128 463.8 334 68.0
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.2e-128 463.8 334 68.0
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.0e-128 463.0 321 70.7
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 3.4e-128 462.2 332 69.3
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 5.8e-128 461.5 334 68.0
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 5.8e-128 461.5 339 67.3
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.6e-128 461.1 334 68.0
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.6e-128 461.1 334 68.0
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.3e-127 460.3 334 67.7
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 1.7e-127 459.9 335 67.8
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 2.2e-127 459.5 336 68.5
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.7e-127 458.8 328 68.0
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.7e-127 458.8 330 67.3
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.4e-127 458.0 334 67.4
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 1.1e-126 457.2 338 67.5
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.4e-126 456.8 329 68.4
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 3.2e-126 455.7 318 70.8
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 9.2e-126 454.1 333 65.5
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 1.7e-124 449.9 334 67.1
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.7e-124 449.9 332 68.1
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 2.3e-124 449.5 338 64.8
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 3.9e-124 448.7 338 66.6
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 3.9e-124 448.7 334 66.8
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 5.1e-124 448.4 334 66.2
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 6.6e-124 448.0 337 65.9
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 1.5e-123 446.8 337 68.5
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.9e-123 446.4 338 66.0
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 2.5e-123 446.0 344 64.2
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 3.3e-123 445.7 338 65.1
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 4.3e-123 445.3 338 64.8
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 7.3e-123 444.5 344 65.4
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 9.6e-123 444.1 338 66.0
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 9.6e-123 444.1 344 66.3
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.6e-122 443.4 338 66.0
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 1.6e-122 443.4 338 64.5
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 2.8e-122 442.6 338 64.8
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 4.7e-122 441.8 335 65.4
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 6.2e-122 441.4 341 64.2
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 6.2e-122 441.4 337 64.7
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 8.1e-122 441.0 330 65.5
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 8.1e-122 441.0 332 65.4
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 1.1e-121 440.7 333 65.5
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.4e-121 440.3 341 64.2
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 1.8e-121 439.9 344 64.2
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 3.1e-121 439.1 338 63.9
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 3.1e-121 439.1 338 63.6
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 3.1e-121 439.1 330 66.1
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 4.0e-121 438.7 338 64.5
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 4.0e-121 438.7 338 64.8
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 5.2e-121 438.3 344 64.0
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 6.8e-121 438.0 337 64.7
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.5e-120 436.8 333 65.8
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.3e-119 433.7 336 65.5
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 1.7e-119 433.3 329 65.7
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 1.7e-119 433.3 333 64.9
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 2.2e-119 433.0 332 65.4
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 2.9e-119 432.6 337 65.0
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 4.9e-119 431.8 367 60.5
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 4.9e-119 431.8 334 64.7
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 1.1e-118 430.6 334 66.2
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 1.4e-118 430.3 318 67.6
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.9e-118 429.9 336 64.3
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 7.1e-118 427.9 335 63.9
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 7.1e-118 427.9 325 64.0
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 1.6e-117 426.8 337 63.2
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 2.7e-117 426.0 318 67.6
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 3.5e-117 425.6 338 64.2
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 2.3e-116 422.9 318 65.7
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 1.1e-115 420.6 327 64.8
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 3.3e-115 419.1 333 62.2
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 4.3e-115 418.7 333 63.4
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 4.3e-115 418.7 330 63.9
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 9.6e-115 417.5 332 63.0
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 6.2e-114 414.8 323 62.5
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 1.1e-113 414.1 330 60.9
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 6.9e-113 411.4 321 63.2
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 9.0e-113 411.0 334 61.4
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 3.4e-112 409.1 338 61.2
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 4.4e-112 408.7 325 62.8
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 2.9e-111 406.0 336 60.4
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 1.4e-110 403.7 329 61.7
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 9.3e-110 401.0 331 61.0
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 3.0e-108 396.0 336 59.2
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 2.5e-107 392.9 339 59.6
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 6.2e-106 388.3 332 59.3
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 1.8e-105 386.7 329 57.1
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 1.8e-105 386.7 329 57.1
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 5.3e-105 385.2 338 58.3
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 9.0e-105 384.4 260 69.2
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.5e-101 372.5 319 56.4
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 3.5e-101 372.5 321 57.9
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 6.7e-100 368.2 323 60.1
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 8.7e-100 367.9 316 56.3
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 8.7e-100 367.9 288 60.8
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 2.0e-96 356.7 320 54.7
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.0e-84 317.8 254 61.4
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 3.9e-84 315.8 326 46.0
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 7.7e-80 301.6 354 43.5
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.7e-79 300.4 332 48.8
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 2.0e-67 260.4 326 38.7
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 2.4e-65 253.4 224 55.8
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 6.7e-60 235.3 150 73.3
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.7e-58 230.7 183 60.1
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 3.1e-57 226.5 183 59.6
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 7.7e-56 221.9 255 47.5
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.9e-55 219.9 184 57.6
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 1.8e-52 210.7 314 35.7
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 5.7e-51 205.7 158 63.9
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.1e-46 191.4 326 35.0
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 2.4e-41 173.7 138 63.8
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 9.5e-38 161.8 146 56.2
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.4e-33 147.9 115 60.9
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 4.1e-33 146.4 261 32.6
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 1.2e-32 144.8 115 60.0
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.6e-32 144.4 114 63.2
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 5.9e-32 142.5 101 68.3
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 3.0e-31 140.2 101 66.3
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 6.6e-31 139.0 102 66.7
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 8.6e-31 138.7 100 62.0
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 8.6e-31 138.7 101 65.3
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 1.1e-30 138.3 101 65.3
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 5.6e-30 136.0 343 27.7
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 9.5e-30 135.2 120 54.2
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 8.0e-29 132.1 184 36.4
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.0e-28 131.7 164 37.2
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.1e-28 130.2 167 38.9
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 9.8e-27 125.2 123 53.7
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.1e-25 121.7 123 52.8
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 2.7e-24 117.1 86 66.3
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 2.7e-24 117.1 86 66.3
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 4.6e-24 116.3 178 36.0
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 3.0e-23 113.6 181 39.2
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 3.6e-21 106.7 110 48.2
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 2.0e-19 100.9 97 50.5
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 4.4e-19 99.8 145 44.1
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.8e-12 77.8 128 40.6
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 9.9e-11 72.0 44 79.5
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.4e-09 68.2 57 59.6
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.4e-09 68.2 238 28.2
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 3.2e-09 67.0 48 66.7
Phvul.006G027500 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 7.1e-09 65.9 254 21.7
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 9.2e-09 65.5 115 40.0
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.6e-08 64.7 197 28.9
Glyma.18G114800 Glycine max HOM05D001610 ORTHO05D001585 1.3e-07 61.6 248 20.2
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 5.1e-07 59.7 231 27.3
C09p68370 Brassica napus HOM05D001610 ORTHO05D001585 6.6e-07 59.3 253 21.3
BolC9t59584H Brassica oleracea HOM05D001610 ORTHO05D001585 6.6e-07 59.3 253 21.3
Glyma.08G304300 Glycine max HOM05D001610 ORTHO05D001585 1.5e-06 58.2 248 19.8
Haze_24746 Corylus avellana HOM05D001610 ORTHO05D001585 1.9e-06 57.8 261 23.4
Sed0027128 Sechium edule HOM05D001610 ORTHO05D001585 1.9e-06 57.8 253 21.3
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.5e-06 57.4 276 20.7
AUR62008828 Chenopodium quinoa HOM05D001610 ORTHO05D001585 3.3e-06 57.0 263 22.8
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 3.3e-06 57.0 215 28.4
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 7.3e-06 55.8 240 26.7
TWI59G0554 Tripterygium wilfordii HOM05D001610 ORTHO05D001585 7.3e-06 55.8 210 21.4
CDE11G0071 Ceratophyllum demersum HOM05D000467 ORTHO05D000379 9.6e-06 55.5 115 33.0


User provided reference genes

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