Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006898.2 Cucumis melo HOM05D003520 ORTHO05D003332 1.2e-132 476.5 240 100.0
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 6.3e-121 437.6 240 93.3
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.5e-101 373.2 239 81.6
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 2.7e-63 246.1 213 64.8
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 2.1e-23 113.6 216 34.7
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 6.7e-22 108.6 177 41.8
Prupe.2G292800 Prunus persica HOM05D003520 ORTHO05D003332 1.5e-21 107.5 181 38.7
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 2.5e-21 106.7 178 41.6
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 6.3e-20 102.1 218 37.6
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.1e-19 101.3 218 37.2
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 1.2e-18 97.8 225 35.1
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.7e-17 94.0 207 37.2
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 1.7e-17 94.0 184 36.4
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.8e-17 92.8 175 37.7
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 6.5e-17 92.0 175 37.7
Sabra12G0103700 Salix brachista HOM05D003520 ORTHO05D003332 8.5e-17 91.7 196 37.2
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.1e-16 91.3 170 38.2
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 3.2e-16 89.7 196 31.6
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.2e-16 89.7 193 33.7
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 3.9e-14 82.8 202 36.1
Lj8C25T11 Lonicera japonica HOM05D003520 ORTHO05D003332 2.0e-13 80.5 182 34.1
CANSAT21G0383 Cannabis sativa HOM05D003520 ORTHO05D003332 5.7e-13 79.0 174 33.9
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 5.7e-13 79.0 202 32.7
Manes.14G027150 Manihot esculenta HOM05D003520 ORTHO05D003332 7.4e-13 78.6 236 30.9
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.8e-12 76.6 215 32.1
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 6.3e-12 75.5 193 31.6
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 8.2e-12 75.1 215 30.2
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 8.2e-12 75.1 201 30.8
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 5.3e-11 72.4 223 29.6
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 9.1e-11 71.6 179 29.6
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 1.5e-10 70.9 248 32.3
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.5e-10 70.9 78 47.4
FAN03G2536 Fragaria x ananassa HOM05D016299 ORTHO05D003332 3.4e-10 69.7 162 35.2
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 5.9e-10 68.9 157 35.0
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 7.7e-10 68.6 202 26.2
RcHm_v2.0_Chr1g0377031 Rosa chinensis HOM05D016299 ORTHO05D003332 1.0e-09 68.2 153 37.3
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.0e-09 68.2 144 33.3
FAN03G3032 Fragaria x ananassa HOM05D016299 ORTHO05D003332 2.9e-09 66.6 136 36.8
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 2.9e-09 66.6 81 45.7
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 3.8e-09 66.2 156 34.0
FvH4_7g29290 Fragaria vesca HOM05D016299 ORTHO05D003332 3.8e-09 66.2 182 31.3
FAN06G4083 Fragaria x ananassa HOM05D016299 ORTHO05D003332 3.8e-09 66.2 182 31.3
FAN06G4500 Fragaria x ananassa HOM05D016299 ORTHO05D003332 3.8e-09 66.2 182 31.3
FAN10G1120 Fragaria x ananassa HOM05D016299 ORTHO05D003332 3.8e-09 66.2 182 31.3
arahy.Tifrunner.gnm1.ann1.SM3UTK Arachis hypogaea HOM05D003520 ORTHO05D003332 8.5e-09 65.1 154 33.1
FAN01G0032 Fragaria x ananassa HOM05D016299 ORTHO05D003332 8.5e-09 65.1 182 31.3
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 8.5e-09 65.1 205 31.2
Lalb_Chr01g0009251 Lupinus albus HOM05D003520 ORTHO05D003332 8.5e-09 65.1 221 30.8
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 1.1e-08 64.7 157 35.0
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.1e-08 64.7 65 50.8
Glyma.09G140500 Glycine max HOM05D003520 ORTHO05D003332 1.9e-08 63.9 159 32.7
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 1.9e-08 63.9 163 30.1
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 1.9e-08 63.9 128 35.2
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 3.2e-08 63.2 151 33.8
Lalb_Chr19g0130921 Lupinus albus HOM05D003520 ORTHO05D003332 3.2e-08 63.2 198 31.8
Oeu024236.1 Olea europaea HOM05D012625 ORTHO05D003332 7.2e-08 62.0 185 29.2
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 9.4e-08 61.6 167 30.5
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 1.2e-07 61.2 139 30.2
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 1.2e-07 61.2 202 32.2
BraA10t43073Z Brassica rapa HOM05D012366 ORTHO05D003332 2.1e-07 60.5 127 31.5
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.1e-07 60.5 154 31.2
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.1e-07 60.5 154 31.2
A10p09930 Brassica napus HOM05D012366 ORTHO05D003332 4.7e-07 59.3 127 33.9
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 4.7e-07 59.3 115 28.7
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 6.1e-07 58.9 109 34.9
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 6.1e-07 58.9 199 29.1
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 2.3e-06 57.0 163 28.2
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.3e-06 57.0 80 40.0
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 3.0e-06 56.6 179 28.5
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 3.0e-06 56.6 170 30.6
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 5.2e-06 55.8 173 31.2
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 5.2e-06 55.8 205 29.3
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 5.2e-06 55.8 68 36.8
BcaC04g20600 Brassica carinata HOM05D012366 ORTHO05D003332 8.8e-06 55.1 127 33.1
C09p41640 Brassica napus HOM05D012366 ORTHO05D003332 8.8e-06 55.1 127 33.1
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 8.8e-06 55.1 96 38.5
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 8.8e-06 55.1 201 27.9


User provided reference genes

Program Settings