Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.4e-182 642.9 329 100.0
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 5.3e-102 375.2 284 74.3
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 7.1e-99 364.8 284 72.2
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 5.7e-80 302.0 281 62.6
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 1.1e-62 244.6 262 51.9
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 2.4e-62 243.4 289 49.8
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 4.1e-62 242.7 298 48.7
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 5.3e-62 242.3 289 49.5
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 7.0e-62 241.9 284 50.7
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 2.0e-61 240.4 287 49.5
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 1.3e-60 237.7 287 50.5
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 2.2e-60 236.9 261 52.1
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 3.8e-60 236.1 251 52.6
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 3.8e-60 236.1 279 50.5
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 8.5e-60 235.0 280 49.3
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.1e-59 234.6 282 48.2
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.4e-59 234.2 276 50.0
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.4e-59 234.2 276 50.0
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.9e-59 233.8 276 49.6
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 2.5e-59 233.4 261 49.4
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.2e-59 233.0 276 50.0
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 5.5e-59 232.3 268 50.7
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.2e-59 231.9 279 49.5
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 3.6e-58 229.6 282 47.9
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.6e-58 229.6 275 48.0
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.7e-58 229.2 265 49.8
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 6.1e-58 228.8 312 45.8
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.8e-57 227.3 276 48.6
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.3e-57 226.9 276 48.9
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 3.0e-57 226.5 279 48.4
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 3.0e-57 226.5 279 48.0
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 3.0e-57 226.5 279 48.0
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 3.0e-57 226.5 280 47.5
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 3.9e-57 226.1 247 50.6
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 1.1e-56 224.6 273 48.7
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 3.3e-56 223.0 275 46.9
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 3.3e-56 223.0 263 49.0
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 5.7e-56 222.2 254 49.6
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 7.4e-56 221.9 273 48.7
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 9.7e-56 221.5 272 50.0
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 1.3e-55 221.1 253 49.8
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 1.8e-54 217.2 283 44.9
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 3.1e-54 216.5 279 47.3
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 5.3e-54 215.7 292 45.2
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 5.3e-54 215.7 287 44.9
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 5.3e-54 215.7 267 47.6
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 1.6e-53 214.2 284 45.1
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 4.5e-53 212.6 260 46.9
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 5.9e-53 212.2 274 46.7
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 1.7e-52 210.7 229 51.1
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 1.7e-52 210.7 275 44.4
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.9e-52 209.9 265 46.0
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 6.5e-52 208.8 290 44.1
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 8.5e-52 208.4 236 49.2
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 1.1e-51 208.0 306 41.8
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 1.5e-51 207.6 285 44.6
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 1.5e-51 207.6 252 46.4
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 2.5e-51 206.8 281 45.2
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 3.2e-51 206.5 242 48.3
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 3.2e-51 206.5 269 46.8
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 5.5e-51 205.7 272 44.5
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 1.2e-50 204.5 289 43.3
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 2.1e-50 203.8 241 47.3
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 3.6e-50 203.0 336 39.3
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 3.6e-50 203.0 290 43.1
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 4.7e-50 202.6 270 45.2
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 1.0e-49 201.4 269 45.0
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 1.0e-49 201.4 290 42.8
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.4e-49 201.1 268 44.8
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.4e-49 201.1 292 43.8
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 2.3e-49 200.3 270 44.8
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 3.0e-49 199.9 287 42.5
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 3.0e-49 199.9 272 44.9
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 3.0e-49 199.9 276 45.3
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 4.0e-49 199.5 276 43.5
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 6.7e-49 198.7 259 46.3
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 1.2e-48 198.0 274 43.4
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 2.0e-48 197.2 243 45.7
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.6e-48 196.8 244 46.7
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.6e-48 196.8 244 46.7
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 7.5e-48 195.3 265 45.3
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 7.5e-48 195.3 283 43.1
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 7.5e-48 195.3 280 43.2
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 9.7e-48 194.9 265 43.4
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 1.3e-47 194.5 272 42.6
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 1.3e-47 194.5 272 42.6
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 1.3e-47 194.5 272 42.6
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 1.7e-47 194.1 273 42.9
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 1.7e-47 194.1 277 44.0
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 2.2e-47 193.7 257 44.4
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 2.2e-47 193.7 273 42.9
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 8.2e-47 191.8 274 41.2
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 1.4e-46 191.0 255 45.5
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 1.8e-46 190.7 271 42.8
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.9e-43 180.6 300 40.3
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.2e-43 179.5 283 41.3
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 6.1e-42 175.6 247 41.7
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 8.0e-42 175.3 234 43.6
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 2.6e-40 170.2 234 42.7
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 4.4e-40 169.5 252 40.5
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.4e-38 164.5 287 37.6
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 6.6e-36 155.6 310 35.2
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 1.8e-30 137.5 99 74.7
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 2.0e-29 134.0 109 58.7
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 2.0e-29 134.0 109 58.7
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 2.0e-29 134.0 189 42.9
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 2.3e-28 130.6 311 33.8
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 8.6e-28 128.6 81 80.2
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 7.3e-27 125.6 189 41.8
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 8.9e-25 118.6 262 32.8
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 2.0e-24 117.5 189 38.6
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 1.5e-19 101.3 241 31.5
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 1.2e-16 91.7 235 30.6
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.9e-15 87.0 214 32.7
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.4e-14 84.7 101 44.6
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.6e-13 79.7 93 47.3
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.8e-13 79.0 91 48.4
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.7e-12 77.8 52 73.1
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 2.1e-10 70.9 45 73.3
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 2.1e-10 70.9 70 50.0
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 8.1e-10 68.9 194 27.3
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 1.8e-09 67.8 200 31.0
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 3.1e-09 67.0 123 37.4
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 1.3e-07 61.6 110 31.8
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 9.2e-06 55.5 252 25.8


User provided reference genes

Program Settings