Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 1.9e-133 479.2 241 100.0
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 1.2e-132 476.5 241 99.2
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 4.1e-128 461.5 253 92.9
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 8.0e-124 447.2 241 92.1
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 1.2e-114 416.8 241 84.2
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 1.3e-113 413.3 233 84.1
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.4e-112 409.1 237 82.3
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.2e-111 406.8 237 81.9
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 1.2e-111 406.8 240 80.8
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 3.5e-111 405.2 241 82.6
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 4.5e-111 404.8 240 82.5
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 7.7e-111 404.1 241 80.5
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 1.0e-110 403.7 241 81.7
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 1.7e-110 402.9 233 82.8
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 2.9e-110 402.1 241 80.9
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 6.6e-110 401.0 232 82.3
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 1.1e-109 400.2 241 80.9
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 1.1e-109 400.2 241 80.9
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 1.1e-109 400.2 231 84.0
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 1.1e-109 400.2 241 80.1
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 1.5e-109 399.8 241 80.9
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 5.6e-109 397.9 233 80.7
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 7.3e-109 397.5 241 79.7
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 7.3e-109 397.5 241 78.4
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 7.3e-109 397.5 241 80.1
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 9.5e-109 397.1 240 80.4
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 9.5e-109 397.1 241 80.1
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 1.6e-108 396.4 241 81.3
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 2.1e-108 396.0 241 79.7
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 3.6e-108 395.2 220 86.4
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 4.7e-108 394.8 238 79.8
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 6.1e-108 394.4 241 79.3
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 1.4e-107 393.3 227 80.6
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 1.8e-107 392.9 241 79.7
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 1.8e-107 392.9 232 80.2
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 2.3e-107 392.5 241 77.6
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 3.0e-107 392.1 241 77.2
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 3.0e-107 392.1 241 78.8
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 4.0e-107 391.7 244 78.7
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 4.0e-107 391.7 231 82.3
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 6.8e-107 391.0 241 78.0
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 1.5e-106 389.8 241 78.4
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 2.0e-106 389.4 241 78.8
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 2.6e-106 389.0 241 78.8
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 3.4e-106 388.7 241 78.0
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 3.4e-106 388.7 241 77.6
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 7.5e-106 387.5 241 78.0
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 7.5e-106 387.5 231 81.4
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.3e-105 386.7 264 75.0
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.7e-105 386.3 241 77.2
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 1.7e-105 386.3 241 77.2
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 2.2e-105 386.0 241 78.4
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 2.2e-105 386.0 241 77.2
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 2.2e-105 386.0 241 77.2
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 3.7e-105 385.2 241 76.8
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 3.7e-105 385.2 241 77.2
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 6.4e-105 384.4 241 78.0
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 6.4e-105 384.4 238 79.8
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 8.3e-105 384.0 241 76.8
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 1.1e-104 383.6 241 75.1
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 1.4e-104 383.3 243 78.2
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 3.2e-104 382.1 261 72.0
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 4.1e-104 381.7 241 74.7
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 4.1e-104 381.7 241 76.3
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 5.4e-104 381.3 263 72.2
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 3.5e-103 378.6 241 76.8
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 5.9e-103 377.9 236 76.7
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 2.3e-102 375.9 229 79.5
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 2.3e-102 375.9 242 76.0
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 3.0e-102 375.6 226 77.4
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 5.0e-102 374.8 229 79.5
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 6.6e-102 374.4 220 80.5
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.9e-101 372.9 237 75.5
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 1.6e-100 369.8 230 77.0
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 3.6e-100 368.6 234 74.4
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 3.4e-98 362.1 228 75.4
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 4.4e-98 361.7 240 70.8
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 1.7e-97 359.8 209 83.7
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 1.7e-97 359.8 228 75.0
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.9e-97 359.0 234 76.1
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 4.9e-97 358.2 228 74.6
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 6.4e-97 357.8 260 68.5
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 1.9e-96 356.3 241 74.3
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 4.1e-96 355.1 241 73.9
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 2.7e-95 352.4 238 72.7
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.1e-93 347.1 250 68.4
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 2.5e-93 345.9 282 63.1
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 7.3e-93 344.4 210 80.5
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 3.6e-92 342.0 259 65.6
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 7.3e-85 317.8 196 77.0
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 3.1e-83 312.4 232 67.7
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 4.4e-82 308.5 196 78.1
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 9.9e-82 307.4 275 60.0
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 4.9e-81 305.1 222 64.9
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 4.9e-81 305.1 222 64.9
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 6.4e-81 304.7 191 76.4
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 1.4e-80 303.5 241 66.0
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 4.6e-79 298.5 211 70.1
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 4.7e-76 288.5 306 52.3
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 4.2e-72 275.4 241 55.2
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 2.7e-71 272.7 177 75.1
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 6.0e-71 271.6 194 69.1
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 6.9e-67 258.1 220 54.5
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 8.4e-65 251.1 160 73.8
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 1.0e-62 244.2 233 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 5.1e-62 241.9 225 51.6
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 4.0e-59 232.3 194 62.4
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 1.2e-58 230.7 186 63.4
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 1.2e-58 230.7 186 63.4
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 2.6e-58 229.6 151 74.2
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 3.2e-56 222.6 227 48.0
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 2.5e-48 196.4 123 78.0
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 1.1e-43 181.0 128 69.5
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 6.1e-39 165.2 163 53.4
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 7.4e-37 158.3 122 63.9
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.7e-33 147.1 93 74.2
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 1.3e-28 131.0 92 71.7
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 9.1e-27 124.8 61 96.7
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 1.3e-25 120.9 86 70.9
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 5.0e-25 119.0 71 73.2
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 1.0e-22 111.3 120 58.3
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 2.8e-20 103.2 55 80.0
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 1.1e-16 91.3 69 68.1
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 5.2e-14 82.4 152 33.6
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 2.0e-10 70.5 65 55.4


User provided reference genes

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