Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.5e-169 599.4 297 100.0
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 8.2e-155 550.4 281 96.1
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.0e-149 533.5 281 93.6
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 3.0e-149 531.9 281 92.5
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 3.4e-148 528.5 281 91.8
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.6e-145 519.6 282 90.8
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 2.3e-144 515.8 281 89.0
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 2.2e-139 499.2 281 85.1
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 3.7e-139 498.4 280 86.4
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 1.8e-138 496.1 280 85.7
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 7.0e-138 494.2 280 85.7
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 7.0e-138 494.2 280 85.7
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.2e-137 493.4 280 85.4
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.3e-136 489.2 280 84.6
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 6.6e-136 487.6 280 84.3
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 8.6e-136 487.3 280 83.9
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 1.5e-135 486.5 282 85.1
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.5e-135 485.7 280 83.9
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 4.3e-135 485.0 280 83.2
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 5.6e-135 484.6 280 82.9
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 5.6e-135 484.6 280 82.9
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.6e-135 484.6 280 84.3
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 7.3e-135 484.2 280 82.9
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 9.5e-135 483.8 280 82.5
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 1.2e-134 483.4 280 84.6
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 1.6e-134 483.0 280 84.3
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.1e-134 482.6 280 82.9
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 2.8e-134 482.3 280 83.6
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.8e-134 482.3 280 83.2
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.8e-134 482.3 280 83.2
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.8e-134 482.3 280 82.5
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.8e-134 482.3 280 83.6
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 3.6e-134 481.9 280 83.6
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 6.1e-134 481.1 280 83.2
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 6.1e-134 481.1 280 82.9
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 8.0e-134 480.7 280 83.6
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.4e-133 479.9 279 83.2
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.4e-133 479.9 280 83.2
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.8e-133 479.6 280 82.5
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 2.3e-133 479.2 280 83.2
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.3e-133 479.2 280 83.2
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 6.8e-133 477.6 296 80.7
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 8.9e-133 477.2 275 82.9
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 2.0e-132 476.1 280 81.4
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 3.4e-132 475.3 280 81.8
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 5.8e-132 474.6 280 81.8
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.7e-131 473.0 273 83.9
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 2.9e-131 472.2 280 82.1
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 3.7e-131 471.9 280 82.1
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 3.7e-131 471.9 280 81.8
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.4e-131 471.1 280 82.5
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 8.3e-131 470.7 280 81.4
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 8.3e-131 470.7 280 82.1
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 8.3e-131 470.7 280 81.1
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.4e-130 469.9 280 82.1
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.4e-130 469.9 280 82.1
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 1.4e-130 469.9 280 81.8
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 1.9e-130 469.5 280 81.8
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 2.4e-130 469.2 280 80.7
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 4.1e-130 468.4 280 81.4
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 4.1e-130 468.4 280 80.7
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 5.4e-130 468.0 280 80.7
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 5.4e-130 468.0 280 80.7
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 5.4e-130 468.0 280 80.0
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 9.2e-130 467.2 282 81.9
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 1.2e-129 466.8 280 82.5
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 1.2e-129 466.8 280 82.5
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 1.6e-129 466.5 280 81.8
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 1.6e-129 466.5 277 81.6
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.6e-129 466.5 280 82.1
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.6e-129 466.5 280 81.4
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 2.0e-129 466.1 279 81.4
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 2.7e-129 465.7 280 80.4
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.7e-129 465.7 294 78.6
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 3.5e-129 465.3 299 77.3
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 3.5e-129 465.3 282 80.5
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 4.6e-129 464.9 280 82.1
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 4.6e-129 464.9 280 82.1
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 6.0e-129 464.5 319 72.7
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 7.8e-129 464.2 280 81.4
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 3.0e-128 462.2 280 80.0
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 6.6e-128 461.1 280 81.1
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.1e-127 460.3 280 80.4
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.9e-127 459.5 277 79.4
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.9e-127 459.5 280 81.1
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.5e-127 459.1 277 79.8
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 3.3e-127 458.8 280 79.6
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 3.3e-127 458.8 273 81.0
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.3e-127 458.4 277 79.4
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 5.6e-127 458.0 277 80.1
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 5.6e-127 458.0 280 80.0
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 7.3e-127 457.6 281 80.8
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 9.5e-127 457.2 273 80.2
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 9.5e-127 457.2 273 81.7
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.2e-126 456.8 272 80.5
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 2.1e-126 456.1 280 78.2
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 3.6e-126 455.3 271 81.5
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 6.2e-126 454.5 277 80.1
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 1.1e-125 453.8 271 81.2
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 1.1e-125 453.8 271 81.2
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 1.1e-125 453.8 271 81.2
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 1.1e-125 453.8 271 81.2
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 1.1e-125 453.8 271 81.2
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 1.4e-125 453.4 277 79.4
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 2.3e-125 452.6 280 77.9
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 6.8e-125 451.1 280 76.8
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 8.9e-125 450.7 281 76.2
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 2.0e-124 449.5 280 77.5
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 3.4e-124 448.7 280 77.9
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 5.8e-124 448.0 288 76.4
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 7.5e-124 447.6 284 77.5
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 1.1e-122 443.7 280 74.6
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.9e-122 443.0 271 80.1
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 2.4e-122 442.6 277 75.5
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 7.0e-122 441.0 277 77.6
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 1.6e-121 439.9 281 77.6
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 2.7e-121 439.1 277 76.2
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 4.6e-121 438.3 255 83.5
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 1.7e-120 436.4 280 75.7
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 6.6e-120 434.5 275 77.1
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 1.9e-119 433.0 280 74.6
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.9e-119 433.0 280 75.0
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 2.5e-119 432.6 280 75.7
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 2.8e-118 429.1 280 74.6
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 2.8e-118 429.1 326 68.1
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 6.2e-118 427.9 270 75.9
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 1.4e-117 426.8 269 78.4
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 3.1e-117 425.6 280 74.3
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 8.9e-117 424.1 280 74.6
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.6e-116 422.5 280 77.5
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 3.4e-116 422.2 282 76.2
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 2.7e-113 412.5 280 72.5
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 2.7e-113 412.5 273 72.2
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 6.0e-113 411.4 280 72.5
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 1.3e-112 410.2 274 71.9
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 2.3e-112 409.5 275 72.7
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 5.1e-112 408.3 280 71.4
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 5.1e-112 408.3 274 72.3
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 8.6e-112 407.5 274 72.3
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 1.5e-111 406.8 274 70.1
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 2.1e-110 402.9 299 69.9
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 4.7e-110 401.7 270 73.0
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 7.6e-108 394.4 274 69.3
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 3.8e-107 392.1 280 65.0
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 1.1e-106 390.6 280 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 3.2e-106 389.0 280 64.6
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.6e-102 376.7 235 77.9
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 1.6e-102 376.7 280 63.2
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.6e-102 376.7 279 63.1
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.8e-102 375.9 279 63.4
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 3.1e-101 372.5 272 65.1
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 7.6e-100 367.9 281 62.6
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 3.1e-93 345.9 276 59.4
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.7e-91 340.1 198 81.8
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 2.2e-91 339.7 249 67.1
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 4.6e-89 332.0 282 62.1
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 5.6e-87 325.1 274 65.7
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 9.0e-85 317.8 296 53.7
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 5.8e-84 315.1 195 76.9
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 3.8e-83 312.4 279 54.8
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 6.4e-83 311.6 200 75.0
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 1.1e-82 310.8 186 82.8
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 1.1e-82 310.8 193 77.7
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 4.2e-82 308.9 219 68.5
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 5.1e-80 302.0 303 51.2
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.7e-75 287.0 168 83.3
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 2.5e-74 283.1 180 75.6
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.8e-72 276.9 280 49.3
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 9.7e-71 271.2 171 79.5
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 2.1e-49 200.3 167 61.7
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.6e-41 174.1 101 81.2
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 3.6e-41 172.9 119 69.7
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 1.8e-40 170.6 147 61.9
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 8.8e-40 168.3 119 68.1
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 3.7e-38 162.9 89 87.6
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.9e-34 150.6 115 62.6
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 4.7e-33 146.0 276 32.2
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 2.3e-32 143.7 239 33.9
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 6.8e-32 142.1 84 79.8
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 1.2e-25 121.3 286 26.6
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 4.1e-21 106.3 135 49.6
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 3.1e-16 90.1 183 27.9
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 3.5e-12 76.6 42 88.1
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 1.6e-09 67.8 50 72.0
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 2.3e-08 63.9 68 50.0


User provided reference genes

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