Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.6e-187 659.4 371 100.0
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.3e-160 570.1 371 89.2
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 9.1e-127 457.6 373 75.3
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 4.8e-120 435.3 376 71.3
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 5.3e-119 431.8 373 70.8
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 4.5e-118 428.7 378 70.4
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 9.4e-116 421.0 371 69.8
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 3.6e-115 419.1 378 68.8
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 4.7e-115 418.7 363 70.0
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 3.4e-113 412.5 371 69.5
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.3e-112 410.6 396 65.2
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 6.3e-112 408.3 375 69.6
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 1.1e-111 407.5 385 66.0
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 1.4e-111 407.1 387 66.1
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 9.1e-111 404.4 381 67.7
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 2.0e-110 403.3 387 67.2
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 1.7e-109 400.2 377 66.3
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 4.2e-108 395.6 376 69.9
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 3.6e-107 392.5 372 65.6
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 1.8e-106 390.2 376 64.1
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 3.0e-106 389.4 330 70.6
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 8.8e-106 387.9 377 64.5
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.5e-105 387.1 376 64.9
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 2.0e-105 386.7 385 65.2
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 2.8e-104 382.9 383 64.0
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 1.8e-103 380.2 326 70.2
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.4e-103 378.6 376 68.1
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 7.0e-103 378.3 377 64.5
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 4.5e-102 375.6 378 65.3
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 4.5e-102 375.6 375 63.7
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 5.9e-102 375.2 371 65.2
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 5.9e-102 375.2 381 64.6
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 2.3e-101 373.2 377 63.1
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.5e-100 370.5 386 62.4
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.9e-100 370.2 332 68.7
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.9e-100 370.2 348 67.0
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.5e-100 369.8 385 62.3
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 4.7e-99 365.5 369 64.2
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 5.2e-98 362.1 375 63.5
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 8.9e-98 361.3 373 65.1
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.2e-96 356.7 374 62.6
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 4.1e-95 352.4 386 60.6
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 7.0e-95 351.7 360 63.9
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.2e-94 350.9 361 63.2
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.7e-94 349.7 324 66.0
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 4.6e-94 349.0 368 62.5
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.3e-93 347.4 378 60.6
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.3e-93 346.7 328 64.9
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 5.0e-93 345.5 377 61.3
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 4.3e-92 342.4 382 58.9
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 2.8e-91 339.7 358 61.5
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.1e-87 327.8 330 64.5
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 2.4e-87 326.6 328 63.4
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 3.2e-87 326.2 410 55.1
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 3.5e-86 322.8 319 63.6
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 6.0e-86 322.0 409 53.8
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.3e-85 320.9 388 59.5
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.7e-85 320.5 307 62.2
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 6.6e-85 318.5 409 53.5
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 6.6e-85 318.5 332 61.4
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 3.3e-84 316.2 377 58.9
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.3e-84 315.8 238 75.2
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 7.3e-84 315.1 343 59.2
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 2.8e-83 313.2 289 69.6
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 3.1e-82 309.7 296 65.2
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 4.0e-82 309.3 378 54.2
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 4.0e-82 309.3 370 57.0
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 5.2e-82 308.9 376 57.2
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 6.8e-82 308.5 339 58.7
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 8.9e-82 308.1 340 57.6
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.5e-81 307.4 374 58.0
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 3.4e-81 306.2 340 57.4
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 7.5e-81 305.1 363 55.9
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 9.8e-81 304.7 338 59.8
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 1.3e-80 304.3 388 53.9
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.7e-80 303.9 336 57.7
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 2.2e-80 303.5 390 54.1
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 4.1e-79 299.3 347 57.1
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 7.1e-79 298.5 390 56.2
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.2e-78 297.7 378 54.8
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.7e-78 296.6 376 54.3
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 7.8e-78 295.0 290 63.1
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 2.3e-77 293.5 378 52.6
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 1.6e-75 287.3 338 55.3
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 8.1e-75 285.0 339 57.2
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.2e-74 282.3 309 60.2
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.5e-73 280.8 375 55.7
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 3.4e-73 279.6 399 51.6
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 7.6e-73 278.5 370 55.9
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 3.8e-72 276.2 376 52.4
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 1.1e-71 274.6 379 52.5
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 1.1e-71 274.6 379 52.5
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-71 274.6 254 66.1
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 4.1e-71 272.7 378 51.9
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 4.1e-71 272.7 378 51.9
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 3.5e-70 269.6 408 48.5
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.3e-69 267.7 399 49.9
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 1.7e-69 267.3 378 51.1
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 3.9e-69 266.2 400 49.0
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 5.6e-68 262.3 248 62.1
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 5.6e-68 262.3 370 51.1
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 1.2e-67 261.2 365 51.5
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 2.8e-67 260.0 332 55.1
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 3.1e-66 256.5 389 49.6
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 5.2e-66 255.8 333 52.6
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.3e-64 251.1 350 50.0
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 3.8e-64 249.6 255 61.2
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 4.9e-64 249.2 382 47.9
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 4.6e-62 242.7 234 59.4
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.7e-61 240.7 374 47.6
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 8.7e-61 238.4 238 58.4
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 8.7e-61 238.4 238 58.4
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 5.6e-60 235.7 267 54.7
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 2.0e-57 227.3 404 47.0
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.1e-52 211.5 314 48.1
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 1.9e-52 210.7 274 51.5
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 7.4e-52 208.8 279 49.8
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 7.4e-52 208.8 379 45.9
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.3e-51 208.0 191 69.1
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 8.1e-51 205.3 386 40.9
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.4e-50 204.5 515 35.5
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 5.3e-50 202.6 365 45.2
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.9e-49 198.4 373 42.6
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 1.3e-48 198.0 372 43.0
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.7e-48 197.6 204 64.2
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 4.9e-48 196.1 375 44.0
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 8.4e-48 195.3 387 40.3
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 4.6e-46 189.5 197 56.3
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.9e-44 184.1 382 43.2
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 3.7e-43 179.9 331 44.7
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 4.9e-40 169.5 314 40.1
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 1.1e-39 168.3 441 36.5
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 3.2e-39 166.8 181 56.9
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 1.1e-28 131.7 208 50.5
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 2.4e-26 124.0 136 51.5
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 2.2e-19 100.9 209 36.8
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 1.3e-16 91.7 88 61.4
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 8.5e-16 89.0 131 46.6
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 1.2e-14 85.1 98 61.2
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 5.9e-09 66.2 157 33.8
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 7.7e-09 65.9 54 68.5
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.5e-07 60.8 121 52.1
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 4.2e-07 60.1 58 63.8


User provided reference genes

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