Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 2.5e-131 472.2 261 100.0
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 9.9e-104 380.6 258 79.1
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.8e-100 369.8 217 95.9
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 2.3e-100 369.4 240 87.1
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.7e-66 256.9 260 53.5
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 3.7e-66 255.8 258 53.5
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 3.7e-66 255.8 258 53.1
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 2.9e-63 246.1 253 51.4
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 1.1e-62 244.2 258 51.6
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.2e-61 240.7 258 49.6
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.7e-61 239.6 259 51.0
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 6.1e-61 238.4 259 50.6
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 1.0e-60 237.7 259 51.0
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 1.3e-58 230.7 258 49.2
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.7e-58 230.3 257 47.9
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 3.7e-58 229.2 259 48.3
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 3.7e-58 229.2 265 48.3
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 6.3e-58 228.4 252 52.8
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 6.3e-58 228.4 267 47.9
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.8e-57 226.9 267 46.4
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 9.1e-57 224.6 255 46.7
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.6e-56 223.8 255 46.7
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.6e-56 223.8 259 47.5
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 2.0e-56 223.4 255 46.3
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.5e-56 222.6 266 51.9
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 4.5e-56 222.2 262 47.7
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 4.5e-56 222.2 273 45.4
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 4.5e-56 222.2 260 48.1
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 5.9e-56 221.9 262 47.3
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 7.7e-56 221.5 258 52.3
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 1.7e-55 220.3 258 48.1
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.1e-54 217.6 262 46.9
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 5.5e-54 215.3 266 51.9
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 7.2e-54 214.9 262 46.9
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 9.4e-54 214.5 262 46.9
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 1.2e-53 214.2 258 50.8
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.6e-53 213.8 257 44.0
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.3e-52 209.9 268 44.0
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.6e-51 206.5 251 44.6
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 7.5e-51 204.9 295 41.4
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 2.8e-50 203.0 253 46.6
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 1.1e-49 201.1 272 43.0
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.6e-48 197.2 256 43.8
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 1.6e-48 197.2 252 42.9
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 2.7e-48 196.4 252 44.8
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 3.5e-48 196.1 253 43.1
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 6.5e-47 191.8 265 42.3
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 4.2e-46 189.1 218 53.7
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.2e-46 189.1 212 50.0
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 5.5e-46 188.7 256 43.0
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 5.5e-46 188.7 258 45.0
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 7.2e-46 188.3 244 42.6
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 9.4e-46 188.0 268 41.4
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 8.0e-45 184.9 273 41.0
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.0e-44 184.5 261 44.1
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 3.0e-44 183.0 259 42.5
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.6e-43 179.9 194 50.5
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 3.4e-43 179.5 204 49.5
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.7e-42 177.2 202 50.5
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 2.2e-42 176.8 267 40.4
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 2.8e-42 176.4 261 42.9
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 2.8e-42 176.4 260 42.7
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 2.8e-42 176.4 255 45.1
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 1.1e-41 174.5 265 41.1
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.4e-41 174.1 281 37.4
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 1.8e-41 173.7 258 41.5
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 3.1e-41 172.9 261 42.9
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 9.2e-41 171.4 262 41.2
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.2e-40 171.0 263 38.8
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 1.6e-40 170.6 265 41.5
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 2.0e-40 170.2 234 44.9
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 4.5e-40 169.1 259 41.3
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 1.0e-39 167.9 263 38.4
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.7e-39 167.2 228 41.7
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 2.3e-39 166.8 264 38.6
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 3.8e-39 166.0 263 39.9
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 8.6e-39 164.9 246 42.3
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.9e-38 163.7 262 37.8
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 5.6e-38 162.2 286 38.5
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 7.3e-38 161.8 266 37.6
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 2.1e-37 160.2 325 34.2
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 6.1e-37 158.7 264 37.5
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 1.0e-36 157.9 181 46.4
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.8e-36 157.1 267 37.5
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 4.0e-36 156.0 250 39.6
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 2.9e-34 149.8 238 39.9
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.9e-34 149.8 253 39.9
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 3.7e-34 149.4 254 39.0
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 6.4e-34 148.7 254 34.6
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.4e-33 147.5 251 38.2
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 3.2e-33 146.4 241 37.3
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 4.1e-33 146.0 249 37.8
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 1.6e-32 144.1 264 35.6
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 2.7e-32 143.3 237 38.0
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 3.5e-32 142.9 251 37.5
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 7.8e-32 141.7 257 38.5
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 2.3e-31 140.2 190 46.3
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.3e-31 140.2 238 34.9
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 3.0e-31 139.8 255 38.0
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 3.0e-31 139.8 227 38.3
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 2.5e-30 136.7 281 34.9
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 3.1e-28 129.8 210 37.1
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 2.6e-27 126.7 195 41.5
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 2.6e-27 126.7 277 36.1
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 7.5e-27 125.2 254 36.2
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 1.3e-26 124.4 282 35.5
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 1.7e-26 124.0 210 36.7
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 3.2e-25 119.8 113 53.1
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 7.0e-25 118.6 257 33.9
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 3.9e-23 112.8 258 35.3
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.9e-22 110.5 142 46.5
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.3e-20 103.6 116 40.5
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 2.9e-18 96.7 115 46.1
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 7.1e-17 92.0 290 28.6
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 2.1e-16 90.5 112 46.4
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 3.9e-15 86.3 186 29.6
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 7.3e-14 82.0 174 36.2
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 2.1e-13 80.5 90 43.3
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.2e-12 75.9 135 40.7
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.5e-11 74.3 61 68.9
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 4.4e-11 72.8 67 64.2
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 9.2e-09 65.1 70 38.6
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.6e-08 64.3 118 31.4
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.7e-08 63.5 66 39.4
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 6.0e-08 62.4 68 55.9
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.8e-08 62.0 77 42.9
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 6.6e-07 58.9 71 42.3
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.5e-06 57.0 69 37.7
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 9.6e-06 55.1 89 31.5


User provided reference genes

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