Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 4124.7 2115 100.0
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 3426.3 2081 87.0
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 3140.5 2072 81.5
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 2567.0 2098 69.0
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2110.9 2185 55.4
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2087.0 2103 56.4
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2081.2 2100 56.1
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2061.6 2125 56.1
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2058.5 2148 55.3
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 2048.9 2109 54.8
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2043.9 2116 55.7
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2041.2 2105 55.6
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2036.2 2120 55.1
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2035.0 2094 55.0
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2025.4 2122 54.9
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2014.2 2108 54.9
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2010.7 2102 54.8
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2006.5 2129 53.8
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2000.7 2097 54.4
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2000.3 2121 54.0
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1998.0 2097 54.3
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1997.2 2131 54.7
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1996.9 2107 53.9
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1996.1 2127 53.7
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1994.5 2097 54.4
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1982.2 2097 53.7
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1968.4 2146 52.8
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1958.3 2106 53.0
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1939.9 2128 53.2
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1864.4 2092 52.2
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1856.3 2100 51.1
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1854.7 2084 52.3
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1850.9 2060 51.6
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1847.0 2111 51.9
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1846.2 2117 51.0
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1843.9 2000 53.2
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1843.6 2104 51.0
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1843.6 2128 51.4
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1842.8 2097 51.9
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1829.3 2111 51.1
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1828.5 2115 51.3
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1827.4 1749 56.7
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1826.2 2134 50.7
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1823.1 2102 51.0
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1822.0 1955 52.5
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1818.1 1998 52.9
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1816.2 1975 53.1
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1805.8 1668 57.7
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1802.7 2158 49.9
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1801.2 2085 50.9
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1798.9 1663 57.3
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1778.1 2090 51.5
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1768.8 2130 50.3
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1766.9 2141 49.6
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1754.2 2115 49.8
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1747.6 2016 50.5
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1747.6 2198 48.5
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1743.8 2132 49.7
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1739.5 2111 49.3
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1738.4 2015 50.4
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1736.9 2120 49.6
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1734.5 2119 49.6
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1732.6 1998 50.5
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1728.0 2117 49.7
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1719.1 1986 50.6
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1718.0 1965 50.7
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1706.4 2102 48.9
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1698.7 2129 48.2
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1692.6 2149 48.2
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1659.0 2088 48.1
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1657.9 2250 46.8
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1652.9 1600 55.8
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1631.3 2118 46.9
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1615.1 2111 47.5
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1604.0 2002 47.5
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1599.7 1852 50.8
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1598.2 2196 45.3
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1589.7 2017 47.4
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1575.8 2003 46.4
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1554.3 1451 57.3
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1539.6 2114 45.0
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1533.1 2139 45.5
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1525.0 2102 46.0
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1518.1 2011 45.2
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1510.0 1991 45.1
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1504.2 2116 44.7
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1503.8 1963 46.2
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1488.8 2084 45.1
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1488.4 1992 45.0
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1482.2 1993 47.1
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1482.2 1993 47.1
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1480.7 1896 46.5
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1479.2 2136 43.9
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1473.8 2024 44.5
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1433.7 1595 50.2
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1411.7 1362 56.5
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1409.0 2098 42.4
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1407.5 2012 43.2
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1397.9 2116 42.7
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1328.5 1305 56.7
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 3.7e-289 999.6 1176 51.8
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 1.0e-283 981.5 1767 35.9
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.2e-279 968.0 2117 33.4
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.4e-264 917.9 1847 34.3
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.1e-261 908.3 2112 33.1
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 1.4e-261 907.9 1119 48.5
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 6.1e-260 902.5 2082 33.5
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 2.2e-254 884.0 1185 46.4
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 6.5e-254 882.5 1988 34.2
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 4.1e-248 863.2 1146 48.3
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 7.0e-248 862.4 1016 53.2
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 6.3e-241 839.3 877 52.5
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.8e-236 823.9 1081 44.8
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 8.0e-236 822.4 1133 44.1
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 2.5e-189 667.9 1926 28.5
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 4.3e-189 667.2 1635 30.9
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 7.9e-175 619.8 552 58.5
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 3.1e-155 554.7 542 55.4
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 1.1e-147 529.6 449 61.7
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.8e-142 512.3 825 41.6
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.1e-135 488.8 662 42.7
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 9.4e-128 463.4 1225 31.3
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 2.7e-127 461.8 737 45.6
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.4e-126 459.5 542 48.2
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.3e-120 438.3 513 45.4
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.0e-113 416.8 545 44.8
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 3.2e-91 342.0 278 62.2
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 5.8e-69 268.1 452 36.9
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 2.8e-63 249.2 388 41.8
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 9.0e-54 217.6 250 46.0
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 3.4e-53 215.7 379 38.5
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 2.9e-52 212.6 539 32.8
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 7.4e-48 198.0 689 31.2
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 4.3e-40 172.2 397 36.0
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 4.2e-35 155.6 135 54.8
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 2.3e-33 149.8 193 40.9
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 4.4e-32 145.6 362 32.0
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 7.0e-30 138.3 170 42.9
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 9.1e-30 137.9 164 46.3
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 2.9e-28 132.9 163 45.4
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.9e-28 132.9 111 65.8
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 8.0e-26 124.8 164 42.7
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 2.3e-25 123.2 121 57.0
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.1e-24 120.9 85 71.8
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 5.7e-24 118.6 891 21.1
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.3e-23 117.5 80 66.2
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.7e-23 117.1 94 67.0
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.9e-20 106.3 120 46.7
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 3.8e-20 105.9 140 45.0
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 2.5e-19 103.2 417 25.7
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.2e-18 100.9 195 37.4
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 1.2e-18 100.9 229 32.3
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 3.8e-12 79.3 56 67.9
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 1.5e-11 77.4 172 34.3
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 9.4e-11 74.7 147 33.3
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 8.0e-10 71.6 70 54.3
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 8.0e-10 71.6 55 61.8
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.4e-09 70.9 79 55.7
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.3e-09 70.1 71 50.7
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 5.7e-08 65.5 79 53.2
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 1.1e-06 61.2 178 42.1
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.8e-06 60.5 130 34.6
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 2.4e-06 60.1 59 52.5
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 4.1e-06 59.3 114 35.1
Phvul.002G075100 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 5.4e-06 58.9 169 33.7


User provided reference genes

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