Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 0.0e+00 1078.5 542 100.0
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 6.7e-296 1020.0 542 93.7
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 5.6e-250 867.5 490 88.8
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 1.5e-242 842.8 544 79.8
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 4.9e-145 518.8 542 50.2
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 5.6e-141 505.4 526 50.0
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 1.3e-137 494.2 526 50.0
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 3.7e-137 492.7 542 47.8
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 2.7e-135 486.5 542 49.4
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 5.6e-133 478.8 547 47.7
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 9.8e-130 468.0 520 48.8
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 1.3e-129 467.6 526 48.7
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 1.9e-128 463.8 538 47.0
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 9.2e-128 461.5 550 46.9
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 1.2e-127 461.1 548 47.8
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 2.0e-127 460.3 532 48.1
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 6.0e-127 458.8 551 46.8
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 2.3e-126 456.8 503 48.7
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 2.3e-126 456.8 510 49.2
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 3.9e-126 456.1 539 47.7
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 8.6e-126 454.9 541 44.7
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.1e-125 454.5 560 45.5
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 1.9e-125 453.8 525 48.4
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 7.3e-125 451.8 539 46.8
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 9.5e-125 451.4 523 47.8
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 1.1e-123 448.0 537 45.8
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 4.0e-123 446.0 545 46.1
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 1.7e-121 440.7 527 46.7
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 6.4e-121 438.7 531 45.6
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 3.2e-120 436.4 524 45.8
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 1.6e-119 434.1 512 47.1
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 1.0e-118 431.4 418 53.8
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 1.9e-117 427.2 588 44.0
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 5.6e-117 425.6 550 43.5
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 3.6e-116 422.9 577 43.5
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 1.8e-115 420.6 532 44.9
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 1.5e-114 417.5 523 45.5
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 3.4e-114 416.4 544 42.5
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 5.8e-114 415.6 496 44.8
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 9.9e-114 414.8 551 43.7
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 4.9e-113 412.5 480 48.5
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 8.4e-113 411.8 525 44.0
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 1.6e-111 407.5 508 45.7
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 1.3e-110 404.4 527 44.2
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.7e-110 404.1 527 44.4
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 6.6e-110 402.1 523 43.4
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 1.1e-109 401.4 602 40.4
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 2.5e-109 400.2 527 44.2
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 4.3e-109 399.4 508 42.1
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 5.6e-109 399.1 561 41.0
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 9.6e-109 398.3 521 44.5
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 8.9e-107 391.7 394 52.8
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 8.9e-107 391.7 519 44.3
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 1.5e-106 391.0 518 44.4
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 7.6e-106 388.7 518 44.2
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 2.9e-105 386.7 521 43.6
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 3.8e-105 386.3 507 44.0
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 3.8e-105 386.3 516 44.0
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 4.2e-104 382.9 431 47.8
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 5.4e-104 382.5 518 43.2
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 9.3e-104 381.7 518 43.2
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 3.5e-103 379.8 518 43.2
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 3.5e-103 379.8 519 43.4
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 6.0e-103 379.0 405 47.4
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 4.3e-101 372.9 569 39.4
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 1.6e-100 370.9 350 54.0
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 1.5e-98 364.4 409 47.7
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 1.3e-97 361.3 477 42.3
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 1.1e-96 358.2 500 42.6
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 2.7e-95 353.6 426 45.3
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 2.3e-94 350.5 436 44.3
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 3.9e-94 349.7 435 46.4
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 1.9e-93 347.4 524 40.6
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 4.3e-93 346.3 701 32.5
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 5.6e-93 345.9 554 39.7
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.8e-91 340.9 523 38.2
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 2.4e-91 340.5 484 41.5
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 2.4e-91 340.5 480 41.0
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 4.0e-91 339.7 563 36.9
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 6.9e-91 339.0 435 44.6
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 2.2e-89 334.0 417 44.8
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 1.2e-87 328.2 384 47.7
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 3.0e-86 323.6 389 45.2
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 3.9e-86 323.2 383 44.6
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 6.7e-86 322.4 368 46.2
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 5.6e-85 319.3 554 37.7
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 2.6e-82 310.5 380 45.3
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 1.6e-79 301.2 398 42.5
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 2.3e-78 297.4 391 40.9
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 3.0e-78 297.0 438 39.7
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 1.5e-74 284.6 385 42.6
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 1.0e-73 282.0 393 42.0
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 7.2e-64 249.2 284 46.5
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 2.3e-54 217.6 211 54.5
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 3.0e-54 217.2 310 40.0
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 6.3e-52 209.5 231 50.2
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 4.0e-46 190.3 522 29.9
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 3.7e-44 183.7 341 34.3
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 4.8e-44 183.3 523 27.9
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 3.1e-35 154.1 287 36.9
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 1.4e-30 138.7 217 36.9
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 5.4e-27 126.7 381 28.1
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 4.7e-23 113.6 212 32.1
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 1.7e-20 105.1 224 31.7
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 6.4e-20 103.2 216 32.9
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 2.5e-16 91.3 134 43.3
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.7e-15 87.0 116 44.0
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.7e-15 87.0 83 53.0
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.8e-14 85.1 173 32.4
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.4e-13 80.9 104 43.3
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 3.2e-11 74.3 189 28.6
Psat6g225040 Pisum sativum HOM05D006967 ORTHO05D008692 1.2e-10 72.4 91 45.1
Aqoxy4G01848 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 3.5e-10 70.9 101 43.6
PGSC0003DMG401016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 1.8e-06 58.5 255 25.1


User provided reference genes

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