Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 1.5e-143 513.1 308 100.0
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.3e-134 483.4 314 95.2
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.7e-123 446.4 306 86.6
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 7.3e-114 414.5 306 77.8
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 5.1e-107 391.7 311 79.7
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 6.4e-94 348.2 305 65.6
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 4.2e-93 345.5 311 64.0
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.2e-92 344.0 309 67.3
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.1e-92 343.2 296 66.6
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.5e-92 342.4 307 66.1
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 4.6e-92 342.0 308 65.6
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 7.9e-92 341.3 307 65.8
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 2.3e-91 339.7 305 62.6
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 5.1e-91 338.6 305 62.0
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 2.1e-89 333.2 295 64.1
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 6.2e-89 331.6 308 60.4
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.0e-87 326.6 310 63.5
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.3e-86 323.9 306 58.8
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.2e-86 323.2 308 61.0
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 1.1e-85 320.9 262 70.6
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 1.1e-85 320.9 305 61.3
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.1e-85 320.9 301 60.5
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 1.6e-84 317.0 262 68.3
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.1e-84 316.6 313 66.8
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 2.7e-84 316.2 305 63.6
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 4.6e-84 315.5 260 68.5
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.3e-83 313.9 293 65.5
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 3.9e-83 312.4 303 64.7
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 5.1e-83 312.0 311 64.0
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 5.1e-83 312.0 263 63.5
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.1e-82 310.8 298 60.4
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.1e-82 310.8 298 62.4
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.9e-82 310.1 310 61.0
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 2.5e-82 309.7 295 59.3
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.5e-82 309.7 305 62.0
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.3e-82 309.3 307 64.8
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 5.7e-82 308.5 305 65.2
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 7.4e-82 308.1 262 66.4
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.3e-81 307.4 305 62.6
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 6.3e-81 305.1 307 62.2
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 3.1e-80 302.8 305 63.6
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 6.9e-80 301.6 305 57.7
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.0e-80 301.2 290 65.9
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 9.0e-80 301.2 308 61.4
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.5e-79 300.4 306 61.1
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 2.0e-79 300.1 297 58.9
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.6e-79 299.7 298 64.4
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.4e-79 299.3 290 65.2
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.4e-79 299.3 290 65.2
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.7e-79 298.1 290 65.2
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.3e-78 297.4 304 58.2
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 2.2e-78 296.6 299 59.2
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.2e-78 296.6 298 61.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 2.2e-78 296.6 296 63.9
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.9e-78 296.2 259 62.5
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 6.5e-78 295.0 297 58.2
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 8.5e-78 294.7 299 58.5
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 8.5e-78 294.7 298 59.7
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 8.5e-78 294.7 269 61.3
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.1e-77 294.3 263 64.6
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.4e-77 293.9 292 60.3
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 1.9e-77 293.5 304 57.6
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 1.9e-77 293.5 260 61.9
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 3.2e-77 292.7 297 55.9
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 3.2e-77 292.7 269 61.0
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 9.4e-77 291.2 306 59.2
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-76 290.8 300 60.0
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 1.2e-76 290.8 308 58.8
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.6e-76 290.4 298 61.4
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.1e-76 290.0 269 60.2
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 2.7e-76 289.7 306 58.2
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.7e-76 289.7 299 56.5
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 7.9e-76 288.1 261 63.6
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 7.9e-76 288.1 267 60.3
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 7.9e-76 288.1 267 59.6
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.0e-75 287.7 298 58.7
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.1e-75 285.4 292 57.9
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 6.7e-75 285.0 305 57.7
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 1.1e-74 284.3 262 62.6
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.5e-74 283.9 260 60.4
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 3.3e-74 282.7 261 60.5
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 7.4e-74 281.6 304 60.5
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.3e-73 280.8 299 58.9
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.7e-73 280.4 298 60.7
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.7e-73 280.4 238 67.6
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 2.8e-73 279.6 301 57.1
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 3.7e-73 279.3 314 59.9
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.8e-73 278.9 299 58.5
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 6.3e-73 278.5 301 55.8
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 6.3e-73 278.5 301 55.8
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 6.3e-73 278.5 301 55.8
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 6.3e-73 278.5 294 56.1
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.4e-72 277.3 306 58.8
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 2.4e-72 276.6 265 62.3
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 6.9e-72 275.0 292 62.0
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.2e-71 274.2 260 60.8
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.2e-71 274.2 261 62.5
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.6e-71 273.1 309 54.7
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.0e-70 271.2 306 58.2
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 1.3e-70 270.8 305 56.4
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.0e-70 268.9 299 61.5
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.0e-70 268.9 299 59.2
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.0e-70 268.9 267 58.1
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 5.0e-70 268.9 298 55.4
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 8.5e-70 268.1 259 59.5
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 2.5e-69 266.5 300 56.7
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.2e-69 266.2 300 60.0
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 3.2e-69 266.2 286 61.5
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.2e-69 265.0 307 60.3
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.1e-68 263.5 266 56.0
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 2.1e-68 263.5 291 54.0
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.0e-67 261.2 299 54.2
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.6e-66 256.5 301 54.2
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 9.7e-66 254.6 301 53.8
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 2.8e-65 253.1 263 55.9
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 8.2e-65 251.5 306 55.9
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 2.4e-64 250.0 304 50.7
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 9.1e-64 248.1 304 53.6
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 2.6e-63 246.5 257 62.3
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 4.5e-63 245.7 304 55.9
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.7e-62 243.8 288 57.6
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 2.2e-62 243.4 308 53.2
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.5e-61 238.8 235 65.5
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.2e-60 237.7 258 60.9
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.0e-59 233.0 293 55.6
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.1e-58 231.1 269 55.0
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 6.3e-57 225.3 305 50.8
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.2e-55 221.1 261 51.7
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 5.9e-55 218.8 313 49.2
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.0e-54 218.0 280 51.1
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.5e-53 213.4 302 50.0
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 4.2e-53 212.6 248 54.4
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 8.0e-52 208.4 214 59.3
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.3e-49 201.1 258 46.1
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.7e-47 193.4 297 45.8
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 3.5e-47 193.0 240 47.5
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.3e-46 191.0 205 57.6
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 2.2e-46 190.3 248 44.4
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 6.8e-43 178.7 298 46.3
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.2e-42 177.9 151 61.6
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 3.4e-42 176.4 264 45.1
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 7.5e-42 175.3 169 64.5
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.7e-41 174.1 194 60.8
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 7.0e-40 168.7 170 61.8
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 7.0e-40 168.7 170 61.8
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 4.5e-39 166.0 199 53.8
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 1.3e-38 164.5 259 42.1
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 1.7e-38 164.1 147 59.9
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.2e-37 159.5 156 57.1
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 9.5e-37 158.3 135 58.5
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 2.8e-36 156.8 188 59.6
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 3.6e-36 156.4 264 41.3
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 8.0e-36 155.2 147 51.7
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 4.0e-35 152.9 288 35.4
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 1.5e-34 151.0 239 39.3
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 4.4e-34 149.4 258 40.3
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.3e-33 147.9 164 49.4
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.9e-33 146.0 187 57.2
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 1.4e-32 144.4 264 42.8
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 2.0e-31 140.6 107 60.7
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 1.1e-29 134.8 263 36.9
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 2.0e-26 124.0 212 37.3
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.7e-25 120.9 101 62.4
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 1.7e-25 120.9 221 39.4
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.9e-25 119.4 117 55.6
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.9e-21 107.5 126 57.1
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 7.3e-21 105.5 72 72.2
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.1e-19 101.7 196 40.3
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.7e-17 94.4 161 46.6
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.9e-17 93.6 98 62.2
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.2e-15 88.2 75 58.7
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.3e-14 84.7 171 39.2
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.1e-14 82.8 87 64.4
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.9e-13 80.9 297 27.3
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 8.1e-12 75.5 113 48.7
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 1.1e-11 75.1 48 72.9
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 4.4e-10 69.7 65 63.1
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 5.8e-10 69.3 247 27.5
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 1.1e-08 65.1 51 64.7
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.4e-08 64.7 60 53.3


User provided reference genes

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