Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 3589.7 1886 100.0
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 3497.6 1888 97.2
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 3320.8 2099 85.5
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 3175.6 1905 86.4
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2693.7 1906 75.3
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2649.4 1905 74.9
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2634.8 1906 74.0
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2621.3 1901 74.1
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2614.3 1895 73.0
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2610.9 1914 72.9
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2603.9 1893 73.4
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2596.6 1894 73.5
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2583.5 1898 73.1
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2578.1 1893 72.8
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2578.1 1904 72.7
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2576.2 1898 71.7
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2565.0 1899 72.5
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2550.8 1899 72.4
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2545.8 1897 72.7
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2540.8 1899 72.8
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2534.2 1893 72.6
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2526.1 1898 72.4
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2516.5 1892 71.2
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2516.5 1897 72.2
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2507.2 1892 71.7
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2506.5 1988 69.7
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2504.9 1912 71.3
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2503.4 1900 71.5
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2498.4 1895 71.0
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2493.8 1898 71.5
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2488.4 1934 70.3
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2486.4 1908 70.6
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2479.9 1897 71.2
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2451.0 1899 70.2
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2438.7 1737 75.9
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2435.6 1898 70.3
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2423.3 1902 69.2
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2421.7 2097 65.4
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2402.9 1935 69.0
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2402.9 1903 69.5
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2388.6 2231 60.3
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2387.1 1959 67.5
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2376.7 1901 67.0
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2375.1 1904 67.6
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2359.3 1905 67.4
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2350.5 1907 66.9
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2342.8 1897 67.6
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2342.4 1908 68.4
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2342.0 1713 72.8
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2335.1 1911 68.0
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2332.0 1904 68.0
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2323.1 1904 67.8
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2314.3 1891 66.1
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2308.1 1867 67.4
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2293.8 1909 67.3
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2289.6 1907 67.3
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2288.5 1907 66.1
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2283.8 1890 66.1
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2277.7 1900 65.4
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2276.5 1913 66.9
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2267.7 1898 65.6
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2252.6 1913 66.5
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2252.2 1889 65.7
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2231.4 1895 66.2
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2226.1 1741 69.7
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2222.2 1900 63.5
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2203.3 1793 68.5
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2192.2 2010 62.6
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2182.1 1897 64.1
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2181.8 1894 64.7
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2181.4 1871 64.8
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2181.0 1799 66.3
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2180.2 1897 64.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2174.8 1903 64.8
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2151.7 1894 64.3
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2149.4 1937 63.5
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2145.5 1933 62.5
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2142.9 1897 63.5
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2141.7 1894 63.6
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2137.1 1894 64.0
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2132.5 1897 63.5
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2125.1 1902 64.3
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2125.1 1915 61.6
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2123.6 1991 60.0
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2109.0 1874 63.2
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 2022.3 1900 61.0
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1979.9 1380 73.5
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1917.9 1518 69.4
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1895.9 1507 69.4
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1890.9 1895 56.3
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1820.4 1991 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1755.3 1984 52.9
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1677.1 1906 52.8
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1668.7 1837 53.6
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1614.0 1909 52.2
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1522.7 1222 70.1
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1494.9 938 80.1
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1425.2 1285 63.9
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1402.1 1102 69.9
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1399.4 1299 63.2
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1314.3 1502 53.3
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1273.1 1232 60.2
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1203.0 852 72.1
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1180.6 1096 64.5
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1176.4 941 66.5
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 9.8e-310 1067.8 1313 46.7
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 4.9e-301 1038.9 1148 56.6
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 2.5e-297 1026.5 675 76.7
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 1.9e-284 983.8 694 74.6
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 2.0e-254 884.0 870 62.3
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.3e-226 791.6 984 53.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 5.5e-220 769.6 1139 44.7
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 4.6e-219 766.5 1292 37.8
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 2.2e-208 731.1 450 84.2
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 4.9e-168 597.0 374 77.5
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 3.6e-155 554.3 1316 32.5
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.4e-152 543.5 366 73.5
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.9e-141 507.7 369 70.2
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 9.6e-140 503.1 367 69.2
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 5.5e-111 407.5 500 51.0
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 8.8e-109 400.2 300 66.3
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.4e-100 371.3 565 46.9
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 6.7e-93 347.4 1474 25.6
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 8.8e-93 347.1 298 63.4
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 4.8e-91 341.3 524 50.6
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.8e-90 339.3 214 76.2
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.5e-87 329.7 240 72.1
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.2e-86 326.6 198 81.3
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 6.3e-83 314.3 1121 26.5
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.1e-82 312.0 263 65.4
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 5.0e-72 278.1 264 56.4
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 6.8e-69 267.7 170 76.5
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 8.0e-62 244.2 229 61.1
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.0e-56 227.3 547 32.5
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 7.3e-55 221.1 246 54.1
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.7e-54 218.4 238 55.0
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 6.2e-54 218.0 190 60.5
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 6.2e-54 218.0 170 62.9
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 5.2e-53 214.9 163 63.2
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.0e-52 213.0 284 50.7
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 5.6e-47 194.9 416 39.7
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.1e-42 177.9 224 50.0
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 7.3e-39 167.9 106 74.5
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 8.9e-37 161.0 89 83.1
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.9e-35 156.0 121 68.6
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 1.5e-28 133.7 75 93.3
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 1.5e-28 133.7 108 70.4
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 9.9e-28 131.0 150 52.0
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 8.4e-27 127.9 149 53.7
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 1.1e-26 127.5 87 66.7
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 9.3e-26 124.4 69 92.8
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 2.7e-25 122.9 115 61.7
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 2.8e-22 112.8 87 60.9
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 1.1e-21 110.9 74 74.3
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 4.0e-21 109.0 75 74.7
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 7.6e-20 104.8 105 55.2
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 1.9e-18 100.1 128 50.0
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.9e-18 100.1 107 57.0
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.1e-17 96.7 58 84.5
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.1e-17 96.7 58 84.5
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.8e-16 93.6 86 52.3
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 1.8e-16 93.6 58 82.8
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 5.6e-15 88.6 77 57.1
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 4.8e-14 85.5 73 60.3
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 1.1e-13 84.3 41 95.1
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 2.6e-12 79.7 36 97.2
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 1.3e-11 77.4 74 60.8
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.1e-10 74.3 75 54.7
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 1.4e-10 73.9 48 72.9
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 2.5e-10 73.2 50 80.0
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 1.8e-08 67.0 69 47.8
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 4.3e-07 62.4 59 59.3
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.8e-06 59.7 105 37.1
Sed0003400 Sechium edule HOM05D003986 ORTHO05D373333 4.8e-06 58.9 30 86.7


User provided reference genes

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