Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 3.0e-218 761.5 373 100.0
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 1.9e-209 732.3 375 95.7
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 1.2e-206 723.0 383 92.7
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 1.1e-201 706.4 371 91.6
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 9.6e-193 676.8 359 88.6
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 1.7e-189 666.0 360 86.1
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 1.7e-189 666.0 360 86.4
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 2.2e-189 665.6 362 84.8
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 2.9e-189 665.2 364 85.7
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 4.9e-189 664.5 356 87.1
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 1.9e-188 662.5 357 87.4
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 1.9e-188 662.5 358 85.8
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 1.9e-188 662.5 361 85.9
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 5.4e-188 661.0 359 86.4
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 2.7e-187 658.7 362 85.6
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 2.7e-187 658.7 362 85.6
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 2.7e-187 658.7 358 86.3
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 2.7e-187 658.7 356 86.5
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 4.6e-187 657.9 363 84.8
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 6.0e-187 657.5 358 86.3
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 1.0e-186 656.8 362 85.4
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 1.8e-186 656.0 357 86.3
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 1.8e-186 656.0 357 86.3
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 2.3e-186 655.6 359 86.4
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 3.0e-186 655.2 358 84.9
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 3.0e-186 655.2 362 84.8
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 3.9e-186 654.8 359 85.0
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 5.1e-186 654.4 363 84.6
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 5.1e-186 654.4 360 86.7
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 6.7e-186 654.1 364 84.6
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 8.7e-186 653.7 362 84.5
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 1.9e-185 652.5 362 84.5
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 3.3e-185 651.7 363 83.2
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 3.3e-185 651.7 356 86.0
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 3.3e-185 651.7 359 84.4
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 4.3e-185 651.4 363 84.3
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 4.3e-185 651.4 358 84.4
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 5.6e-185 651.0 358 84.6
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 7.4e-185 650.6 356 85.7
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 1.6e-184 649.4 361 83.1
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 2.1e-184 649.0 360 84.4
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 2.1e-184 649.0 355 85.1
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 2.1e-184 649.0 361 84.8
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 2.8e-184 648.7 365 83.6
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 2.8e-184 648.7 353 87.5
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 3.6e-184 648.3 357 84.6
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 1.4e-183 646.4 360 84.4
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 1.8e-183 646.0 386 79.8
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 4.0e-183 644.8 356 84.8
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 9.0e-183 643.7 356 84.3
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 9.0e-183 643.7 359 83.6
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 9.0e-183 643.7 359 84.1
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 1.5e-182 642.9 361 83.7
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 2.6e-182 642.1 376 80.9
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 3.4e-182 641.7 358 83.8
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 3.4e-182 641.7 359 83.0
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 4.5e-182 641.3 356 84.3
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 5.8e-182 641.0 356 84.8
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 7.6e-182 640.6 363 81.5
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 9.9e-182 640.2 356 84.8
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 9.9e-182 640.2 356 84.3
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 1.3e-181 639.8 359 83.8
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 1.1e-180 636.7 358 83.0
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 1.9e-180 636.0 357 83.5
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 1.9e-180 636.0 356 82.9
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 7.1e-180 634.0 356 84.6
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 9.3e-180 633.6 355 83.4
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 1.2e-179 633.3 365 81.9
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 2.1e-179 632.5 358 82.4
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 6.0e-179 630.9 357 81.8
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 7.9e-179 630.6 360 83.3
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 8.7e-178 627.1 363 80.7
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 1.9e-177 625.9 360 82.2
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 1.9e-177 625.9 361 80.9
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 3.3e-177 625.2 361 81.4
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 3.3e-177 625.2 361 81.4
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 3.3e-177 625.2 375 78.1
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 5.6e-177 624.4 353 82.2
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 5.6e-177 624.4 351 81.2
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 2.1e-176 622.5 378 78.8
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 2.1e-176 622.5 373 78.3
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 4.8e-176 621.3 366 78.4
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 8.2e-176 620.5 358 80.4
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 1.8e-175 619.4 360 78.6
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 1.8e-175 619.4 353 80.7
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 5.3e-175 617.8 375 79.2
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 1.5e-174 616.3 368 80.2
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 2.6e-174 615.5 358 79.6
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 1.0e-173 613.6 360 80.0
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 2.2e-173 612.5 380 76.6
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 2.9e-173 612.1 359 80.8
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 8.4e-173 610.5 388 74.7
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 1.1e-172 610.1 359 79.4
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 6.0e-171 604.4 352 81.2
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 7.9e-171 604.0 374 77.0
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 1.0e-170 603.6 377 74.5
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 1.3e-170 603.2 342 81.3
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.8e-170 602.8 370 77.6
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 5.7e-169 597.8 373 81.8
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 1.3e-168 596.7 365 78.9
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.1e-168 595.9 353 80.2
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 3.7e-168 595.1 369 76.7
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 2.0e-166 589.3 360 78.3
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.7e-165 586.3 372 76.3
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 1.7e-165 586.3 358 77.1
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 2.2e-165 585.9 365 75.6
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 2.9e-165 585.5 365 75.1
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 8.5e-165 583.9 364 78.3
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 1.1e-164 583.6 357 77.3
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 7.9e-163 577.4 357 75.6
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 1.3e-162 576.6 366 74.0
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.3e-162 576.6 351 76.1
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 6.7e-162 574.3 357 74.8
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 1.1e-161 573.5 343 77.8
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 4.8e-160 568.2 356 77.0
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 1.0e-157 560.5 298 87.6
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 1.4e-156 556.6 373 70.0
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 4.6e-155 551.6 428 65.7
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 7.9e-155 550.8 381 69.0
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.8e-154 549.7 358 73.7
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 1.8e-154 549.7 353 72.5
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.5e-153 546.6 358 72.6
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 2.0e-153 546.2 343 74.1
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 2.0e-153 546.2 361 72.3
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 3.1e-151 538.9 344 71.5
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.0e-149 533.9 367 71.9
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 2.1e-147 526.2 277 88.8
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.8e-143 513.1 363 66.9
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.2e-141 506.1 290 81.0
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 8.0e-139 497.7 355 64.8
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 2.7e-134 482.6 350 64.9
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 2.1e-131 473.0 267 85.8
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 1.8e-130 469.9 356 65.2
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 6.8e-130 468.0 716 39.9
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 8.8e-130 467.6 240 90.0
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 5.4e-127 458.4 310 67.7
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 5.4e-127 458.4 330 62.4
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 8.3e-112 407.9 348 55.5
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 3.5e-110 402.5 241 78.0
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 1.4e-106 390.6 338 58.9
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 4.7e-99 365.5 343 55.7
CBR_g31495 Chara braunii HOM05D004177 ORTHO05D004826 1.7e-96 357.1 256 63.7
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 4.9e-96 355.5 216 75.0
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 3.0e-85 319.7 202 74.3
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 8.1e-83 311.6 291 57.4
CAN.G744.9 Capsicum annuum HOM05D004177 ORTHO05D004826 6.3e-51 205.7 142 71.1
HanXRQChr13g0409461 Helianthus annuus HOM05D004177 ORTHO05D004826 1.1e-47 194.9 121 81.0
HanXRQChr04g0126441 Helianthus annuus HOM05D004177 ORTHO05D004826 2.5e-47 193.7 100 90.0
Oeu062208.1 Olea europaea HOM05D004177 ORTHO05D004826 6.1e-46 189.1 126 73.8
Oeu062209.1 Olea europaea HOM05D004177 ORTHO05D004826 6.1e-46 189.1 123 76.4
Oeu062213.1 Olea europaea HOM05D004177 ORTHO05D004826 1.4e-45 188.0 123 75.6
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis HOM05D004177 ORTHO05D004826 6.7e-45 185.7 171 55.6
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 3.3e-44 183.3 113 78.8
Actinidia03786 Actinidia chinensis HOM05D004177 ORTHO05D004826 6.3e-43 179.1 101 86.1
Oeu062211.1 Olea europaea HOM05D004177 ORTHO05D004826 6.3e-43 179.1 125 70.4
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 9.4e-39 165.2 128 64.8
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 7.9e-38 162.2 98 75.5
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 3.1e-34 150.2 111 65.8
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 7.0e-34 149.1 126 61.1
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 2.6e-25 120.6 69 81.2
Actinidia39745 Actinidia chinensis HOM05D004177 ORTHO05D004826 3.8e-24 116.7 74 74.3
Oeu056107.1 Olea europaea HOM05D004177 ORTHO05D004826 5.5e-23 112.8 67 80.6
RcHm_v2.0_Chr6g0296851 Rosa chinensis HOM05D004177 ORTHO05D004826 5.5e-23 112.8 67 80.6
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 4.1e-18 96.7 61 75.4
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 4.5e-17 93.2 65 63.1
Peaxi162Scf00287g00176 Petunia axillaris HOM05D004177 ORTHO05D004826 1.0e-16 92.0 84 56.0
Nn4g24830 Nelumbo nucifera HOM05D004177 ORTHO05D004826 6.5e-16 89.4 131 45.0
Pp3c1_32420 Physcomitrium patens HOM05D004177 ORTHO05D004826 3.0e-13 80.5 49 73.5
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 3.4e-12 77.0 62 56.5
Medtr8g079080 Medicago truncatula HOM05D004177 ORTHO05D004826 3.8e-08 63.5 41 68.3
VMungo0647G1164 Vigna mungo HOM05D004177 ORTHO05D004826 1.5e-07 61.6 68 52.9


User provided reference genes

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