Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 2.2e-263 911.8 456 100.0
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.4e-257 892.5 456 97.8
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 3.1e-254 881.3 456 96.3
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 2.5e-243 845.1 456 92.1
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 1.4e-241 839.3 456 92.1
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 9.5e-227 790.0 456 86.6
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 4.7e-226 787.7 456 86.4
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 2.0e-224 782.3 456 85.7
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 1.3e-223 779.6 455 84.8
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 2.2e-223 778.9 456 85.3
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 5.4e-222 774.2 456 84.6
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 1.2e-221 773.1 456 84.6
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 1.6e-221 772.7 456 84.6
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 2.0e-221 772.3 456 84.0
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 7.8e-221 770.4 464 82.8
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 1.0e-220 770.0 456 84.6
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.3e-220 768.8 458 83.4
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 5.0e-220 767.7 456 84.6
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 8.6e-220 766.9 457 84.5
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.9e-219 765.8 456 83.1
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 2.5e-219 765.4 464 83.4
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 7.3e-219 763.8 427 88.1
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 7.3e-219 763.8 456 83.3
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 9.5e-219 763.5 427 87.8
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 2.1e-218 762.3 456 84.0
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 2.8e-218 761.9 456 84.6
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 3.6e-218 761.5 456 82.7
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 6.2e-218 760.8 457 83.4
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 6.2e-218 760.8 457 83.4
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 6.2e-218 760.8 457 82.7
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 8.1e-218 760.4 457 83.4
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 1.1e-217 760.0 456 83.1
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 3.1e-217 758.4 456 83.3
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 4.0e-217 758.1 460 82.8
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 5.2e-217 757.7 463 82.5
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 6.8e-217 757.3 456 81.6
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 6.8e-217 757.3 456 83.8
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 8.9e-217 756.9 458 83.0
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 3.4e-216 755.0 449 84.2
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 4.4e-216 754.6 456 82.9
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 7.5e-216 753.8 427 86.7
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 9.8e-216 753.4 456 82.5
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 3.7e-215 751.5 457 82.9
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 1.9e-214 749.2 451 82.7
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 4.1e-214 748.0 419 86.9
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 7.1e-214 747.3 464 81.7
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.1e-213 745.7 437 85.1
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 4.6e-213 744.6 464 81.5
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 4.6e-213 744.6 464 81.2
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 1.7e-212 742.7 453 80.6
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 1.7e-212 742.7 464 78.9
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 2.3e-212 742.3 457 80.7
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 1.1e-211 740.0 458 80.3
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.1e-211 740.0 464 81.0
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 2.5e-211 738.8 428 85.0
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.3e-211 738.4 464 80.8
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 3.3e-211 738.4 457 80.5
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 5.6e-211 737.6 456 80.7
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 5.6e-211 737.6 463 78.6
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 9.5e-211 736.9 451 80.7
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 9.5e-211 736.9 451 80.7
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 1.6e-210 736.1 451 81.4
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 2.1e-210 735.7 457 80.3
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 3.6e-210 734.9 456 80.5
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 4.7e-210 734.6 457 80.1
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 4.7e-210 734.6 454 80.6
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 1.1e-209 733.4 457 79.9
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 1.1e-209 733.4 466 78.8
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.4e-209 733.0 429 83.2
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 1.8e-209 732.6 420 86.0
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 2.6e-208 728.8 435 81.8
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 9.9e-208 726.9 466 79.0
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 1.3e-207 726.5 468 77.6
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 1.3e-207 726.5 463 77.5
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 1.3e-207 726.5 427 83.6
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 1.7e-207 726.1 459 79.1
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 1.7e-207 726.1 459 79.1
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 4.9e-207 724.5 506 73.5
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 8.4e-207 723.8 459 79.3
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 8.4e-207 723.8 459 79.1
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 8.4e-207 723.8 459 79.1
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 8.4e-207 723.8 459 79.3
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 1.4e-206 723.0 461 79.8
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 3.2e-206 721.8 460 79.3
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 7.1e-206 720.7 463 79.0
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 1.2e-205 719.9 466 77.0
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 2.7e-205 718.8 413 84.7
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 4.6e-205 718.0 428 84.8
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 4.6e-205 718.0 428 84.8
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 4.6e-205 718.0 435 82.1
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 2.3e-204 715.7 461 77.0
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 5.1e-204 714.5 409 86.6
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 6.6e-204 714.1 409 85.3
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 6.6e-204 714.1 461 79.8
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 5.6e-203 711.1 464 77.2
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 6.2e-202 707.6 479 73.9
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 6.9e-201 704.1 438 79.9
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 4.3e-195 684.9 391 85.4
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 7.6e-192 674.1 454 74.7
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 1.1e-190 670.2 455 76.5
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 1.4e-190 669.8 383 85.9
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 2.1e-189 666.0 525 67.0
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 6.0e-189 664.5 383 85.1
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 7.4e-187 657.5 397 82.4
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 8.1e-186 654.1 459 73.0
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 2.4e-185 652.5 460 73.3
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.1e-185 652.1 419 78.0
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 4.0e-185 651.7 417 77.2
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 5.5e-182 641.3 409 77.5
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 7.4e-179 630.9 413 76.5
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 1.6e-178 629.8 437 73.5
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 3.7e-178 628.6 457 70.7
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 5.3e-177 624.8 434 72.4
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 4.5e-176 621.7 457 71.3
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 7.6e-176 620.9 414 74.4
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.7e-175 619.8 409 73.8
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 4.6e-173 611.7 330 92.1
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 9.7e-171 604.0 410 72.0
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.5e-163 580.1 463 67.0
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 2.1e-157 559.7 425 68.7
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 5.2e-148 528.5 427 60.9
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.7e-146 523.5 551 53.9
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 7.5e-139 498.0 330 76.4
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 3.8e-135 485.7 410 59.3
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 1.6e-125 453.8 369 62.6
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 4.3e-118 429.1 401 56.4
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 7.8e-112 408.3 414 52.2
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 3.0e-111 406.4 261 77.0
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 7.3e-110 401.7 251 79.3
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.1e-108 397.9 410 53.9
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 5.6e-78 295.8 188 79.8
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 3.6e-77 293.1 387 42.6
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 3.6e-77 293.1 310 52.9
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 6.2e-77 292.4 173 83.8
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 4.8e-61 239.6 361 41.0
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 9.0e-60 235.3 155 72.3
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 1.0e-47 195.3 117 84.6
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.2e-45 187.6 386 33.4
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 2.0e-30 137.9 72 90.3
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 9.7e-30 135.6 83 75.9
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 1.8e-28 131.3 79 84.8
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 1.0e-26 125.6 81 81.5
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 5.2e-23 113.2 105 59.0
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 2.0e-22 111.3 76 72.4
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 7.0e-20 102.8 66 83.3
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.7e-16 90.1 296 26.7
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 6.8e-15 86.3 61 70.5
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 2.6e-14 84.3 59 74.6
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 2.9e-10 70.9 50 68.0
CDE05G3312 Ceratophyllum demersum HOM05D004870 ORTHO05D130477 3.3e-09 67.4 74 51.4
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 1.2e-08 65.5 49 63.3
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 1.2e-08 65.5 49 63.3
AUR62002710 Chenopodium quinoa HOM05D004870 ORTHO05D138226 1.2e-06 58.9 44 68.2
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 2.6e-06 57.8 162 25.9
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 7.5e-06 56.2 156 27.6
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 7.5e-06 56.2 160 25.6
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 9.8e-06 55.8 162 26.5


User provided reference genes

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