Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004988.2 Cucumis melo HOM05D006201 ORTHO05D007178 0.0e+00 1561.2 787 100.0
CsaV3_1G013180 Cucumis sativus L. HOM05D006201 ORTHO05D007178 0.0e+00 1457.2 817 90.8
ClCG03G002510 Citrullus lanatus HOM05D006201 ORTHO05D007178 0.0e+00 1340.1 818 84.4
Sed0013207 Sechium edule HOM05D006201 ORTHO05D007178 0.0e+00 1221.1 816 77.7
Prupe.6G285000 Prunus persica HOM05D006201 ORTHO05D007178 2.4e-222 776.2 845 49.7
MD04G1166800 Malus domestica HOM05D006201 ORTHO05D007178 3.8e-215 752.3 837 48.5
Cfa017112 Carpinus fangiana HOM05D006201 ORTHO05D007178 1.3e-212 743.8 832 48.8
CiPaw.09G215500 Carya illinoinensis HOM05D006201 ORTHO05D007178 5.3e-209 731.9 853 48.3
QL07p033902 Quercus lobata HOM05D006201 ORTHO05D007178 2.1e-205 719.9 852 47.8
Haze_21088 Corylus avellana HOM05D006201 ORTHO05D007178 2.3e-204 716.5 851 47.2
CANSAT35G1627 Cannabis sativa HOM05D006201 ORTHO05D007178 5.3e-201 705.3 838 46.7
Manes.09G111900 Manihot esculenta HOM05D006201 ORTHO05D007178 2.0e-200 703.4 824 47.7
FAN05G0393 Fragaria x ananassa HOM05D006201 ORTHO05D007178 3.8e-199 699.1 828 46.4
FAN05G0066 Fragaria x ananassa HOM05D006201 ORTHO05D007178 4.2e-198 695.7 828 46.3
Rhsim05G0225800 Rhododendron simsii HOM05D006201 ORTHO05D007178 3.0e-196 689.5 858 45.9
ClCG10G022450 Citrullus lanatus HOM05D006201 ORTHO05D007178 3.3e-195 686.0 789 52.7
Ciclev10024812m.g Citrus clementina HOM05D006201 ORTHO05D007178 9.7e-195 684.5 830 46.3
Actinidia11549 Actinidia chinensis HOM05D006201 ORTHO05D007178 4.8e-194 682.2 839 46.2
TWI77G1003 Tripterygium wilfordii HOM05D006201 ORTHO05D007178 1.2e-192 677.6 846 46.3
Duzib093G1324 Durio zibethinus HOM05D006201 ORTHO05D007178 3.4e-192 676.0 803 46.3
vmacro20327 Vaccinium macrocarpon HOM05D006201 ORTHO05D007178 1.9e-190 670.2 865 45.1
Psat3g124360 Pisum sativum HOM05D006201 ORTHO05D007178 7.4e-187 658.3 827 45.0
Sabra16G0130900 Salix brachista HOM05D006201 ORTHO05D007178 9.7e-187 657.9 837 44.3
FAN14G5119 Fragaria x ananassa HOM05D006201 ORTHO05D007178 1.7e-186 657.1 870 43.7
Lj2C67G1 Lonicera japonica HOM05D006201 ORTHO05D007178 2.8e-186 656.4 843 45.0
Thecc.05G006600 Theobroma cacao HOM05D006201 ORTHO05D007178 1.8e-185 653.7 837 43.8
Medtr7g070280 Medicago truncatula HOM05D006201 ORTHO05D007178 7.0e-185 651.7 820 45.4
Cpa.g.sc861.1 Carica papaya HOM05D006201 ORTHO05D007178 1.3e-183 647.5 849 42.9
Lalb_Chr01g0023361 Lupinus albus HOM05D006201 ORTHO05D007178 9.4e-182 641.3 817 45.7
TPR.G6637 Trifolium pratense HOM05D006201 ORTHO05D007178 3.6e-181 639.4 838 44.3
Lj1g0025030 Lotus japonicus HOM05D006201 ORTHO05D007178 6.1e-181 638.6 821 44.3
Glyma.07G156700 Glycine max HOM05D006201 ORTHO05D007178 3.5e-176 622.9 840 43.9
Gorai.012G119200 Gossypium raimondii HOM05D006201 ORTHO05D007178 3.5e-176 622.9 837 43.2
Gohir.A04G095500 Gossypium hirsutum HOM05D006201 ORTHO05D007178 4.5e-176 622.5 843 42.3
VMungo1383G1579 Vigna mungo HOM05D006201 ORTHO05D007178 5.9e-176 622.1 816 44.2
FAN02G1356 Fragaria x ananassa HOM05D006201 ORTHO05D007178 4.7e-173 612.5 828 42.6
PGR004G1794 Punica granatum HOM05D006201 ORTHO05D007178 8.8e-172 608.2 842 43.8
Oeu020418.1 Olea europaea HOM05D006201 ORTHO05D007178 2.3e-164 583.6 787 41.8
EL10Ac5g12480 Beta vulgaris HOM05D006201 ORTHO05D007178 2.2e-162 577.0 810 40.4
Nitab4.5_0003493g0040 Nicotiana tabacum HOM05D006201 ORTHO05D007178 4.9e-162 575.9 817 41.0
Nitab4.5_0006173g0010 Nicotiana tabacum HOM05D006201 ORTHO05D007178 4.1e-161 572.8 819 40.3
MSTRG.5539 Avicennia marina HOM05D006201 ORTHO05D007178 5.9e-160 568.9 815 40.2
Cc06_g00730 Coffea canephora HOM05D006201 ORTHO05D007178 3.3e-158 563.1 816 40.8
Sc22g0002850 Simmondsia chinensis HOM05D006201 ORTHO05D007178 9.5e-158 561.6 807 40.6
Lsat_1_v5_gn_5_149661 Lactuca sativa HOM05D006201 ORTHO05D007178 1.4e-156 557.8 831 41.3
SGA_v2.0_scaffold85G26680 Striga asiatica HOM05D006201 ORTHO05D007178 1.8e-156 557.4 814 40.9
Sopen01g036050 Solanum pennellii HOM05D006201 ORTHO05D007178 1.3e-154 551.2 829 39.8
FvH4_6g10600 Fragaria vesca HOM05D006201 ORTHO05D007178 1.7e-154 550.8 688 44.9
PGSC0003DMG400026051 Solanum tuberosum HOM05D006201 ORTHO05D007178 2.9e-154 550.1 828 40.0
DCAR_023994 Daucus carota HOM05D006201 ORTHO05D007178 4.9e-154 549.3 823 39.6
RcHm_v2.0_Chr3g0461591 Rosa chinensis HOM05D006201 ORTHO05D007178 1.1e-153 548.1 657 47.0
HanXRQChr12g0375461 Helianthus annuus HOM05D006201 ORTHO05D007178 4.1e-153 546.2 808 40.5
AL3G19800 Arabidopsis lyrata HOM05D006201 ORTHO05D007178 9.2e-153 545.0 831 39.1
AUR62036404 Chenopodium quinoa HOM05D006201 ORTHO05D007178 1.6e-152 544.3 807 39.4
Aqoxy1G01280 Aquilegia oxysepala HOM05D006201 ORTHO05D007178 3.5e-152 543.1 843 39.1
arahy.Tifrunner.gnm1.ann1.0N3F9M Arachis hypogaea HOM05D006201 ORTHO05D007178 1.7e-151 540.8 837 39.1
Aa31LG5G18800 Aethionema arabicum HOM05D006201 ORTHO05D007178 2.3e-151 540.4 830 39.2
Sp3g07220 Schrenkiella parvula HOM05D006201 ORTHO05D007178 2.3e-151 540.4 832 38.8
arahy.Tifrunner.gnm1.ann1.WUZ318 Arachis hypogaea HOM05D006201 ORTHO05D007178 3.9e-151 539.7 837 38.9
Migut.J00094 Erythranthe guttata HOM05D006201 ORTHO05D007178 3.9e-151 539.7 806 38.3
PSO349G0155 Papaver somniferum HOM05D006201 ORTHO05D007178 8.6e-151 538.5 844 39.2
PSO017G2042 Papaver somniferum HOM05D006201 ORTHO05D007178 1.1e-150 538.1 830 39.9
Ah.12g059100 Amaranthus hybridus HOM05D006201 ORTHO05D007178 1.5e-150 537.7 814 38.3
BraA05t22910Z Brassica rapa HOM05D006201 ORTHO05D007178 4.0e-148 529.6 830 38.0
C05p59050 Brassica napus HOM05D006201 ORTHO05D007178 5.2e-148 529.3 830 38.3
MBI09_g02137_MAGBIO Magnolia biondii HOM05D006201 ORTHO05D007178 5.2e-148 529.3 847 39.9
BolC5t34557H Brassica oleracea HOM05D006201 ORTHO05D007178 6.8e-148 528.9 831 38.3
CARHR083120 Cardamine hirsuta HOM05D006201 ORTHO05D007178 2.0e-147 527.3 820 38.9
THA.LOC104823304 Tarenaya hassleriana HOM05D006201 ORTHO05D007178 4.4e-147 526.2 836 38.3
A05p40010 Brassica napus HOM05D006201 ORTHO05D007178 9.8e-147 525.0 830 38.1
Carub.0003s0793 Capsella rubella HOM05D006201 ORTHO05D007178 2.1e-144 517.3 829 37.0
BcaC05g29618 Brassica carinata HOM05D006201 ORTHO05D007178 9.5e-142 508.4 833 38.1
COL.COLO4_14449 Corchorus olitorius HOM05D006201 ORTHO05D007178 6.2e-141 505.8 709 42.5
Thhalv10022535m.g Eutrema salsugineum HOM05D006201 ORTHO05D007178 5.2e-140 502.7 832 36.4
AUR62030757 Chenopodium quinoa HOM05D006201 ORTHO05D007178 2.0e-139 500.7 780 38.5
CSS0012693 Camellia sinensis var. sinensis HOM05D006201 ORTHO05D007178 2.2e-138 497.3 585 49.4
Gohir.D04G135400 Gossypium hirsutum HOM05D006201 ORTHO05D007178 1.2e-136 491.5 714 40.9
GSVIVG01030267001 Vitis vinifera HOM05D006201 ORTHO05D007178 4.6e-136 489.6 579 49.7
AUR62044474 Chenopodium quinoa HOM05D006201 ORTHO05D007178 1.6e-133 481.1 800 37.1
Ca_07697_v3 Cicer arietinum L. HOM05D006201 ORTHO05D007178 3.1e-132 476.9 617 45.4
Eucgr.K02944 Eucalyptus grandis HOM05D006201 ORTHO05D007178 2.4e-124 450.7 686 40.7
unitig_578.g15909 Utricularia gibba HOM05D006201 ORTHO05D007178 1.7e-119 434.5 799 37.4
Solyc01g090260.5.1 Solanum lycopersicum HOM05D006201 ORTHO05D007178 3.8e-114 416.8 700 38.1
CAN.G1473.10 Capsicum annuum HOM05D006201 ORTHO05D007178 8.4e-114 415.6 620 40.6
Dinv12171 Davidia involucrata HOM05D006201 ORTHO05D007178 1.6e-112 411.4 543 42.2
ECA248G2923 Erigeron canadensis HOM05D006201 ORTHO05D007178 6.9e-108 396.0 1143 27.9
TAR623G1020 Trochodendron aralioides HOM05D006201 ORTHO05D007178 4.6e-104 383.3 434 49.3
Nn4g22431 Nelumbo nucifera HOM05D006201 ORTHO05D007178 7.9e-104 382.5 536 42.5
Atru.chr8.2337 Acer truncatum HOM05D006201 ORTHO05D007178 1.9e-102 377.9 376 52.7
AT3G08800 Arabidopsis thaliana HOM05D006201 ORTHO05D007178 4.5e-91 340.1 525 39.6
Potri.016G127500 Populus trichocarpa HOM05D006201 ORTHO05D007178 1.3e-90 338.6 485 39.6
Phvul.008G092200 Phaseolus vulgaris HOM05D006201 ORTHO05D007178 2.5e-89 334.3 375 49.1
CDE04G1687 Ceratophyllum demersum HOM05D006201 ORTHO05D007178 3.7e-85 320.5 807 29.2
Zm00001eb012870 Zea mays HOM05D006201 ORTHO05D007178 3.7e-85 320.5 763 32.0
HPP92_025099 Vanilla planifolia HOM05D006201 ORTHO05D007178 1.5e-83 315.1 699 32.6
Rhsim05G0226000 Rhododendron simsii HOM05D006201 ORTHO05D007178 8.5e-82 309.3 500 38.4
Dinv12170 Davidia involucrata HOM05D006201 ORTHO05D007178 3.7e-77 293.9 269 58.0
Hund14942 Selenicereus undatus HOM05D006201 ORTHO05D007178 5.3e-76 290.0 460 37.2
Hma1.2p1_0479F.1_g161690 Hydrangea macrophylla HOM05D006201 ORTHO05D007178 8.5e-74 282.7 341 42.8
Hund14937 Selenicereus undatus HOM05D006201 ORTHO05D007178 3.7e-69 267.3 274 48.9
Mapoly0011s0138 Marchantia polymorpha HOM05D006201 ORTHO05D007178 8.0e-56 223.0 824 25.4
ATR0605G352 Amborella trichopoda HOM05D006201 ORTHO05D007178 5.7e-54 216.9 281 44.1
Peaxi162Scf00028g00419 Petunia axillaris HOM05D006201 ORTHO05D007178 5.7e-54 216.9 323 40.6
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 9.8e-54 216.1 275 42.9
ATR0605G310 Amborella trichopoda HOM05D006201 ORTHO05D007178 7.5e-46 189.9 344 35.2
Peaxi162Scf00028g00413 Petunia axillaris HOM05D006201 ORTHO05D007178 1.5e-41 175.6 403 33.5
AagrBONN_evm.TU.Sc2ySwM_344.1123 Anthoceros agrestis HOM05D006201 ORTHO05D007178 1.8e-39 168.7 292 35.3
RcHm_v2.0_Chr3g0461601 Rosa chinensis HOM05D006201 ORTHO05D007178 2.2e-37 161.8 147 56.5
SEGI_30477 Sequoiadendron giganteum HOM05D006201 ORTHO05D007178 2.4e-36 158.3 389 29.3
MELO3C032539.2 Cucumis melo HOM05D006201 ORTHO05D007178 1.1e-33 149.4 87 87.4
SEGI_17367 Sequoiadendron giganteum HOM05D006201 ORTHO05D007178 4.3e-33 147.5 190 44.2
Pp3c1_35690 Physcomitrium patens HOM05D006201 ORTHO05D007178 1.2e-32 146.0 293 33.1
CAN.G1473.9 Capsicum annuum HOM05D006201 ORTHO05D007178 1.1e-25 122.9 101 58.4
CANSAT64G1736 Cannabis sativa HOM05D006201 ORTHO05D007178 3.3e-25 121.3 122 54.1
CARHR220410 Cardamine hirsuta HOM05D006201 ORTHO05D007178 6.6e-18 97.1 132 38.6
SMO351G0194 Selaginella moellendorffii HOM05D006201 ORTHO05D007178 4.7e-16 90.9 316 25.3
Nn2g13629 Nelumbo nucifera HOM05D001630 ORTHO05D007178 1.8e-15 89.0 333 24.6
Rhsim05G0225900 Rhododendron simsii HOM05D006201 ORTHO05D007178 3.0e-10 71.6 104 40.4
SEGI_33665 Sequoiadendron giganteum HOM05D006201 ORTHO05D007178 2.8e-08 65.1 123 35.0
CBR_g8780 Chara braunii HOM05D006201 ORTHO05D007178 1.4e-07 62.8 314 25.5


User provided reference genes

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