Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 2119.7 1094 100.0
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 2059.6 1094 96.7
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1892.9 1094 89.2
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1643.2 931 92.7
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1602.4 1133 73.6
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1560.0 1130 72.4
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1534.6 1122 71.3
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1533.1 1126 71.4
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1524.2 1134 70.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1519.2 1131 70.6
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1505.7 1129 70.6
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1505.3 1108 71.5
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1501.5 1126 70.1
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1499.2 1133 70.4
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1495.3 1129 69.9
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1495.3 1122 70.3
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1494.6 1127 69.1
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1493.0 1139 68.6
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1491.5 1126 70.4
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1490.3 1130 69.5
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1490.3 1128 69.9
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1486.5 1106 71.2
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1482.6 1119 70.3
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1477.6 1146 69.3
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1474.9 1151 68.4
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1474.9 1140 68.9
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1474.1 1124 69.8
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1473.8 1123 69.4
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1471.4 1106 70.0
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1470.3 1129 69.2
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1466.8 1118 69.2
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1462.6 1122 69.0
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1458.7 1110 69.9
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1453.7 1130 68.9
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1453.0 1106 69.8
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1451.8 1123 69.1
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1440.6 1124 68.1
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1439.5 1107 68.8
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1437.9 1117 68.7
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1429.1 1105 68.7
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1424.8 1148 67.1
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1419.1 1133 68.3
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1413.3 1131 67.9
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1410.2 1110 68.6
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1403.3 1135 66.7
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1393.3 1135 66.7
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1375.9 1134 66.0
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1373.2 1131 65.3
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1370.5 1078 68.8
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1367.8 1124 65.5
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1361.7 1120 65.0
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1356.3 1113 66.4
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1355.1 1130 65.0
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1343.6 1126 64.2
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1342.4 1085 66.1
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1342.4 1123 64.6
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1340.5 1095 67.1
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1338.6 1086 65.9
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1336.6 1137 63.7
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1334.7 1134 64.8
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1334.7 1090 66.0
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1333.9 1125 63.9
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1333.2 1128 64.1
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1327.8 1131 63.7
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1327.4 1095 64.8
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1322.8 1127 63.8
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1322.0 1127 64.2
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1318.9 1180 61.4
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1312.0 1133 63.5
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1305.8 1159 61.8
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1301.2 1122 64.2
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1299.3 1106 63.2
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1298.1 1107 63.6
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1293.5 1101 64.3
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1280.4 1057 64.9
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1275.8 1126 61.9
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1273.1 1084 63.5
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1260.7 1086 63.1
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1260.4 1110 61.6
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1253.8 1082 62.4
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1252.3 1084 62.3
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1249.2 1075 62.8
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1244.2 1083 62.0
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1241.1 1068 62.5
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1231.5 1005 67.4
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1218.0 1066 62.3
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1201.8 915 68.3
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1199.5 1262 54.6
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1194.5 914 68.1
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1170.6 1020 62.5
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1161.4 1107 59.4
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1149.4 1067 57.0
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1140.9 1080 57.3
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1114.0 1078 58.3
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1107.0 935 63.5
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1094.3 1348 49.5
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1091.6 1071 57.3
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1086.2 1126 56.0
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 5.5e-289 998.0 927 60.4
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.4e-287 993.4 1021 57.6
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 6.3e-277 958.0 1033 54.3
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 8.5e-274 947.6 866 64.1
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 2.8e-240 836.3 784 61.2
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 5.8e-230 802.0 1120 43.1
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 7.6e-230 801.6 1134 42.6
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 5.4e-228 795.4 1084 41.9
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.3e-226 790.8 1116 41.7
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.9e-225 786.9 1125 41.5
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 3.4e-222 776.2 875 54.2
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 4.9e-221 772.3 673 60.8
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 4.6e-219 765.8 776 57.6
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 4.3e-217 759.2 956 50.1
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.6e-214 750.0 871 53.0
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 1.1e-201 708.0 646 61.3
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.0e-197 694.9 638 59.2
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.1e-196 691.4 1029 38.9
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 6.1e-187 659.1 522 64.4
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.5e-174 617.8 523 62.0
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 8.0e-171 605.5 420 76.9
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 3.0e-170 603.6 428 75.5
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.2e-158 565.1 520 58.8
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 6.8e-138 496.1 476 58.2
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 3.6e-131 473.8 401 66.3
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 7.1e-119 433.0 344 66.6
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 4.3e-108 397.1 638 39.5
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 3.2e-103 380.9 228 78.1
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 1.3e-101 375.6 338 60.7
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 9.9e-97 359.4 825 31.4
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.5e-89 335.5 351 51.9
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 6.0e-86 323.6 250 64.8
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 7.9e-86 323.2 348 55.2
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 5.7e-76 290.4 234 68.8
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 2.7e-70 271.6 507 37.9
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.3e-69 268.5 1064 24.8
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 8.2e-67 260.0 141 87.2
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.5e-65 255.8 195 63.6
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 2.2e-64 251.9 141 85.1
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 3.8e-64 251.1 190 71.1
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.9e-63 248.8 145 81.4
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 4.2e-63 247.7 1257 23.0
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.5e-55 222.6 240 50.4
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.2e-55 221.5 510 34.7
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.4e-53 216.1 161 74.5
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.4e-53 216.1 161 74.5
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 2.3e-53 215.3 256 47.7
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 4.8e-51 207.6 140 80.7
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 1.8e-50 205.7 118 81.4
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 5.3e-50 204.1 116 82.8
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.7e-48 199.1 116 81.0
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 5.2e-45 187.6 131 77.1
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.3e-43 183.0 140 72.1
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 8.3e-43 180.3 128 75.0
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 2.4e-42 178.7 145 61.4
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.8e-37 162.5 183 48.1
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.3e-37 162.2 83 94.0
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 5.2e-37 161.0 136 64.7
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 2.8e-35 155.2 82 85.4
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 5.4e-34 151.0 191 52.4
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 2.3e-32 145.6 83 80.7
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 4.3e-31 141.4 1131 20.2
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 5.6e-31 141.0 112 70.5
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 8.9e-29 133.7 88 84.1
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.4e-28 131.7 160 53.8
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.1e-26 126.7 110 58.2
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.7e-24 119.4 104 64.4
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.5e-23 116.3 153 42.5
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 3.3e-23 115.2 166 45.2
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-22 113.2 134 46.3
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 3.1e-21 108.6 85 61.2
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 8.3e-19 100.5 106 50.0
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.4e-18 99.8 95 56.8
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 6.6e-16 90.9 138 40.6
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 6.4e-11 74.3 48 81.2
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 7.1e-10 70.9 59 69.5
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 6.6e-08 64.3 43 67.4


User provided reference genes

Program Settings