Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004738.2 Cucumis melo HOM05D000246 ORTHO05D034834 2.3e-27 124.8 60 100.0
ClCG02G015120 Citrullus lanatus HOM05D000246 ORTHO05D002923 6.4e-14 80.1 40 95.0
MELO3C004201.2 Cucumis melo HOM05D000246 ORTHO05D002923 1.4e-13 79.0 40 92.5
CsaV3_2G006900 Cucumis sativus L. HOM05D000246 ORTHO05D002923 3.2e-13 77.8 40 90.0
Sed0006123 Sechium edule HOM05D000246 ORTHO05D002923 1.9e-10 68.6 40 77.5
RcHm_v2.0_Chr3g0456831 Rosa chinensis HOM05D000246 ORTHO05D002923 9.5e-10 66.2 39 74.4
C05p61490 Brassica napus HOM05D000246 ORTHO05D002923 1.6e-09 65.5 40 75.0
Potri.005G019800 Populus trichocarpa HOM05D000246 ORTHO05D002923 1.6e-09 65.5 40 75.0
Sabra05G0026000 Salix brachista HOM05D002110 ORTHO05D002923 1.6e-09 65.5 40 72.5
BolC5t34807H Brassica oleracea HOM05D000246 ORTHO05D002923 2.1e-09 65.1 40 72.5
FvH4_6g07200 Fragaria vesca HOM05D000246 ORTHO05D002923 2.1e-09 65.1 39 71.8
FAN02G1438 Fragaria x ananassa HOM05D000246 ORTHO05D002923 2.1e-09 65.1 39 71.8
FAN05G5219 Fragaria x ananassa HOM05D000246 ORTHO05D002923 2.1e-09 65.1 39 71.8
FAN09G1399 Fragaria x ananassa HOM05D000246 ORTHO05D002923 2.1e-09 65.1 39 71.8
Manes.09G175300 Manihot esculenta HOM05D000246 ORTHO05D002923 2.1e-09 65.1 40 70.0
BraA05t22945Z Brassica rapa HOM05D000246 ORTHO05D002923 3.6e-09 64.3 40 72.5
CiPaw.07G027600 Carya illinoinensis HOM05D000246 ORTHO05D002923 4.7e-09 63.9 43 67.4
Prupe.6G315300 Prunus persica HOM05D000246 ORTHO05D002923 4.7e-09 63.9 40 70.0
AL3G16440 Arabidopsis lyrata HOM05D000246 ORTHO05D002923 6.2e-09 63.5 40 70.0
GSVIVG01031213001 Vitis vinifera HOM05D000246 ORTHO05D002923 6.2e-09 63.5 40 70.0
Sp3g04620 Schrenkiella parvula HOM05D000246 ORTHO05D002923 8.1e-09 63.2 39 74.4
BcaC05g29783 Brassica carinata HOM05D002110 ORTHO05D002923 1.4e-08 62.4 40 72.5
Cfa006683 Carpinus fangiana HOM05D000246 ORTHO05D002923 1.8e-08 62.0 39 71.8
Haze_04083 Corylus avellana HOM05D000246 ORTHO05D002923 1.8e-08 62.0 43 67.4
Aa31LG5G16160 Aethionema arabicum HOM05D000246 ORTHO05D002923 5.2e-08 60.5 40 67.5
MSTRG.16399 Avicennia marina HOM05D000246 ORTHO05D002923 5.2e-08 60.5 40 62.5
CANSAT54G0490 Cannabis sativa HOM05D000246 ORTHO05D002923 5.2e-08 60.5 39 66.7
Thhalv10020334m.g Eutrema salsugineum HOM05D000246 ORTHO05D002923 5.2e-08 60.5 40 67.5
MBI18_g24949_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D002923 5.2e-08 60.5 40 67.5
Thecc.05G320700 Theobroma cacao HOM05D000246 ORTHO05D002923 5.2e-08 60.5 40 67.5
Duzib128G0763 Durio zibethinus HOM05D000246 ORTHO05D002923 6.8e-08 60.1 40 67.5
Atru.chr2.145 Acer truncatum HOM05D000246 ORTHO05D002923 8.9e-08 59.7 40 67.5
AT3G05740 Arabidopsis thaliana HOM05D000246 ORTHO05D002923 1.2e-07 59.3 40 65.0
THA.LOC104818742 Tarenaya hassleriana HOM05D000246 ORTHO05D002923 1.2e-07 59.3 40 67.5
Carub.0003s0511 Capsella rubella HOM05D000246 ORTHO05D002923 2.0e-07 58.5 40 65.0
CSS0021792 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D002923 2.6e-07 58.2 40 65.0
Dinv30867 Davidia involucrata HOM05D000246 ORTHO05D002923 4.4e-07 57.4 36 69.4
Cc02_g34780 Coffea canephora HOM05D000246 ORTHO05D002923 5.8e-07 57.0 39 64.1
COL.COLO4_04135 Corchorus olitorius HOM05D000246 ORTHO05D034834 5.8e-07 57.0 39 69.2
PGR083G0708 Punica granatum HOM05D000246 ORTHO05D002923 5.8e-07 57.0 37 64.9
TAR633G1706 Trochodendron aralioides HOM05D000246 ORTHO05D002923 5.8e-07 57.0 39 61.5
QL03p018259 Quercus lobata HOM05D000246 ORTHO05D002923 7.6e-07 56.6 39 64.1
vmacro01551 Vaccinium macrocarpon HOM05D000246 ORTHO05D002923 7.6e-07 56.6 40 60.0
Nn3g21625 Nelumbo nucifera HOM05D000246 ORTHO05D002923 1.3e-06 55.8 39 61.5
unitig_747.g21340 Utricularia gibba HOM05D000246 ORTHO05D002923 1.3e-06 55.8 35 68.6
Lsat_1_v5_gn_7_73480 Lactuca sativa HOM05D000246 ORTHO05D002923 1.7e-06 55.5 36 63.9
Medtr1g083840 Medicago truncatula HOM05D000246 ORTHO05D002923 1.7e-06 55.5 37 62.2
PGSC0003DMG400002809 Solanum tuberosum HOM05D000246 ORTHO05D034834 1.7e-06 55.5 40 60.0
CARHR080210 Cardamine hirsuta HOM05D000246 ORTHO05D002923 2.2e-06 55.1 40 62.5
Rhsim11G0093700 Rhododendron simsii HOM05D000246 ORTHO05D002923 2.2e-06 55.1 40 57.5
Cpa.g.sc48.140 Carica papaya HOM05D000246 ORTHO05D002923 2.9e-06 54.7 36 66.7
Migut.B00994 Erythranthe guttata HOM05D000246 ORTHO05D002923 2.9e-06 54.7 40 57.5
Psat0s4480g0120 Pisum sativum HOM05D000246 ORTHO05D002923 3.7e-06 54.3 37 59.5
Solyc01g100280.4 Solanum lycopersicum HOM05D000246 ORTHO05D002923 3.7e-06 54.3 40 57.5
arahy.Tifrunner.gnm1.ann1.0I9860 Arachis hypogaea HOM05D000246 ORTHO05D002923 4.9e-06 53.9 36 66.7
arahy.Tifrunner.gnm1.ann1.TG9W9E Arachis hypogaea HOM05D000246 ORTHO05D002923 4.9e-06 53.9 36 66.7
HanXRQChr15g0466281 Helianthus annuus HOM05D000246 ORTHO05D002923 4.9e-06 53.9 36 61.1
TPR.G2635 Trifolium pratense HOM05D000246 ORTHO05D002923 4.9e-06 53.9 37 59.5
Nitab4.5_0000368g0300 Nicotiana tabacum HOM05D000246 ORTHO05D002923 6.4e-06 53.5 36 63.9
SGA_v2.0_scaffold53G19325 Striga asiatica HOM05D000246 ORTHO05D002923 6.4e-06 53.5 40 60.0
ATR0706G115 Amborella trichopoda HOM05D000246 ORTHO05D002923 8.4e-06 53.1 37 62.2
Glyma.10G148300 Glycine max HOM05D000246 ORTHO05D002923 8.4e-06 53.1 35 68.6
Lj5g0013944 Lotus japonicus HOM05D000246 ORTHO05D002923 8.4e-06 53.1 36 58.3
Nitab4.5_0006072g0020 Nicotiana tabacum HOM05D000246 ORTHO05D002923 8.4e-06 53.1 36 63.9
VMungo0720G1080 Vigna mungo HOM05D000246 ORTHO05D002923 8.4e-06 53.1 35 68.6


User provided reference genes

Program Settings