Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 3989.9 2034 100.0
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 3381.3 2013 88.3
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 3147.1 2014 82.0
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 3106.2 1990 82.9
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2564.6 2017 66.4
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2538.5 2018 65.9
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2525.0 2017 65.8
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2518.8 2020 64.6
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2513.0 2017 65.1
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2511.1 2017 65.2
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2510.7 2021 65.2
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2495.7 2018 64.3
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2476.4 2017 64.4
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2463.7 2043 63.0
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2462.6 1996 64.3
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2457.9 2017 64.0
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2456.4 2032 63.7
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2451.4 2019 63.2
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2447.9 2019 63.4
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2447.9 1995 63.9
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2442.9 2019 63.2
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2441.0 2018 63.3
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2440.2 2040 63.8
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2428.7 2019 63.1
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2419.0 2017 62.9
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2417.1 2030 63.0
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2415.6 2020 62.6
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2415.6 2019 63.2
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2412.1 2034 62.8
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2409.4 2009 62.7
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2395.5 2076 60.9
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2395.2 2016 62.0
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2389.4 2024 62.0
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2373.2 2024 61.8
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2372.0 2022 62.6
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2372.0 2019 62.0
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2368.2 2024 61.3
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2350.5 2147 59.4
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2347.0 2018 60.8
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2342.0 2018 60.7
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2341.6 2019 60.7
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2321.2 2020 59.9
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2312.3 2018 60.7
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2311.2 2015 60.1
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2307.3 2023 60.1
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2306.9 1843 66.1
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2302.3 2015 59.9
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2293.8 2015 59.8
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2287.3 2018 59.6
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2283.8 2025 59.6
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2273.4 2020 59.5
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2257.3 2089 57.8
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2256.9 2015 59.5
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2251.5 2018 58.7
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2243.8 2017 58.7
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2236.1 2032 58.4
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2230.7 2019 58.5
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2229.9 2017 58.4
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2225.7 2015 58.3
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2223.0 2017 58.1
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2220.7 2071 57.4
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2210.3 2019 58.5
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2200.2 2020 57.1
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2196.0 2051 57.4
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2179.1 1997 57.6
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2176.4 2021 57.4
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2176.0 2023 57.6
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2171.7 2022 57.4
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2169.8 2020 58.0
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2164.0 1751 64.2
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2152.9 2017 56.7
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2149.4 2450 50.4
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2128.2 1716 64.6
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2114.3 2027 56.8
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2094.3 2055 55.9
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2062.7 2020 55.6
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2005.3 1637 65.0
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 1984.9 1603 65.0
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1824.3 1434 65.9
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1783.1 1587 58.5
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1688.7 1424 61.4
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1604.7 1187 69.2
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1594.3 2043 43.2
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1549.3 2030 43.1
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1496.5 1554 52.6
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1481.5 2053 42.1
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1474.1 1965 45.8
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1466.8 1579 50.7
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1404.0 2062 39.8
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1255.0 1188 55.8
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1229.5 1368 50.0
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1205.7 2025 37.2
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1193.7 841 70.4
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1191.0 1090 58.9
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 1.9e-306 1057.0 1255 48.8
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.6e-286 989.6 1352 44.0
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 4.5e-284 982.6 782 63.9
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-283 981.1 1581 40.7
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 5.3e-261 906.0 1575 38.7
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 2.4e-253 880.6 701 66.8
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 5.9e-252 875.9 783 56.4
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.0e-247 860.9 771 57.7
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 7.2e-226 789.3 822 52.6
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 4.1e-205 720.3 1042 43.6
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.9e-202 711.4 701 52.5
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.2e-196 692.2 508 70.1
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.9e-189 668.3 737 50.5
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.4e-184 652.1 518 66.2
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 9.9e-183 646.0 1042 38.6
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 7.1e-181 639.8 1009 37.4
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.0e-167 595.1 508 63.4
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 7.4e-122 443.7 398 56.8
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.2e-97 362.5 554 41.7
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 2.8e-97 362.1 299 62.2
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 4.5e-95 354.8 547 43.5
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.5e-90 339.7 228 75.0
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.7e-87 328.9 366 48.9
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 3.6e-84 318.5 299 57.9
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 4.7e-84 318.2 277 60.3
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 6.8e-83 314.3 380 48.2
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 7.1e-80 304.3 322 53.4
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 2.1e-79 302.8 329 52.0
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 2.1e-76 292.7 265 59.6
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 6.4e-73 281.2 281 55.5
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 3.5e-71 275.4 165 80.6
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 5.6e-69 268.1 352 45.2
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 1.2e-63 250.4 176 71.0
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 9.0e-59 234.2 230 54.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 9.0e-59 234.2 230 54.8
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.5e-58 233.4 181 65.7
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.5e-55 222.2 202 59.9
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 9.0e-51 207.6 211 55.0
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 2.9e-49 202.6 216 52.8
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-48 200.7 399 38.8
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.9e-45 189.9 1704 21.7
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 9.0e-43 181.0 368 36.4
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 3.3e-37 162.5 302 34.4
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.6e-36 160.2 172 54.7
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 3.7e-36 159.1 248 43.1
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 4.8e-36 158.7 467 31.9
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 1.4e-35 157.1 125 66.4
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 3.4e-34 152.5 118 64.4
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.0e-30 141.0 141 53.9
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.8e-30 140.2 122 55.7
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 6.7e-30 138.3 82 74.4
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.6e-28 133.7 172 45.3
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 2.8e-28 132.9 75 85.3
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 4.8e-28 132.1 127 55.9
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.0e-25 124.4 140 50.7
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 8.5e-25 121.3 95 64.2
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 6.1e-23 115.2 200 36.0
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 3.0e-22 112.8 972 22.3
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 3.0e-22 112.8 105 57.1
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 3.0e-22 112.8 107 56.1
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 9.7e-21 107.8 81 65.4
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 8.2e-20 104.8 103 48.5
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 4.5e-18 99.0 774 21.1
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 6.5e-17 95.1 57 78.9
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.5e-16 93.2 72 61.1
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 7.2e-16 91.7 98 55.1
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.2e-15 90.9 80 55.0
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 1.2e-15 90.9 98 55.1
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 9.7e-13 81.3 133 37.6
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 7.0e-11 75.1 46 76.1
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 1.5e-10 73.9 37 86.5
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 5.0e-09 68.9 64 48.4
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 5.0e-09 68.9 124 42.7
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 3.2e-08 66.2 46 73.9
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 5.5e-08 65.5 81 48.1
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.5e-08 65.5 68 48.5
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 7.2e-08 65.1 63 57.1
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 7.2e-08 65.1 34 82.4
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 1.2e-07 64.3 51 62.7
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.1e-07 63.5 43 67.4
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 3.6e-07 62.8 54 55.6
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.4e-06 60.8 44 63.6
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 1.4e-06 60.8 41 65.9
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 4.0e-06 59.3 40 62.5


User provided reference genes

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