Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 7.6e-158 560.5 284 100.0
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.6e-150 535.4 285 95.8
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.5e-142 509.6 285 90.2
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.1e-121 440.3 296 78.4
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 8.9e-98 360.9 292 62.3
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.5e-97 360.1 288 63.9
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.7e-96 356.7 254 68.9
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 6.4e-96 354.8 286 63.3
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.4e-95 351.7 287 61.3
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 3.5e-94 349.0 282 60.6
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.5e-94 349.0 282 60.3
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.0e-93 347.4 286 61.9
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 2.3e-93 346.3 297 59.3
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 8.6e-93 344.4 303 59.4
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.1e-92 344.0 253 66.0
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.9e-92 343.2 289 60.2
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.3e-92 342.0 262 64.9
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 7.3e-92 341.3 283 60.8
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.6e-91 340.1 285 60.4
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.0e-90 337.4 286 60.8
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.4e-90 337.0 273 61.2
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.8e-90 336.7 300 58.3
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 3.1e-90 335.9 253 64.8
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 4.4e-89 332.0 292 58.2
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 3.7e-88 328.9 264 62.1
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 4.9e-88 328.6 287 58.5
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 8.3e-88 327.8 286 59.4
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.1e-87 327.4 271 57.6
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.1e-87 327.4 284 58.1
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.1e-87 327.4 291 57.0
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 9.2e-87 324.3 271 57.2
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.2e-86 323.9 273 59.7
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.3e-85 320.5 281 57.7
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 3.0e-85 319.3 268 58.6
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 8.6e-85 317.8 283 55.8
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 8.6e-85 317.8 283 56.2
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.1e-84 317.4 291 55.3
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 2.5e-84 316.2 287 59.6
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 7.3e-84 314.7 266 59.8
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 9.5e-84 314.3 262 58.4
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 1.6e-83 313.5 292 54.1
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 2.1e-83 313.2 283 53.4
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.7e-83 312.0 251 60.6
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.1e-82 310.8 287 55.1
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.1e-82 310.8 286 54.9
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.8e-82 310.1 276 56.9
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 6.8e-82 308.1 250 58.0
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 8.9e-82 307.8 254 60.2
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.2e-81 307.4 278 57.6
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 2.6e-81 306.2 251 59.4
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 3.4e-81 305.8 292 54.1
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.3e-80 303.9 292 53.1
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 3.7e-80 302.4 252 61.1
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-79 300.8 252 57.5
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.1e-79 300.8 263 58.9
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.6e-78 297.0 258 57.0
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 3.5e-78 295.8 275 52.4
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 3.5e-78 295.8 261 57.1
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.0e-77 294.3 284 52.5
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 2.3e-77 293.1 267 54.7
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 2.3e-77 293.1 261 56.7
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 2.3e-77 293.1 261 57.1
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 6.6e-77 291.6 288 52.1
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.6e-75 287.0 262 53.4
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.8e-75 286.2 281 50.5
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-74 284.3 293 51.2
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.4e-74 283.9 270 52.2
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 4.0e-74 282.3 284 49.3
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.0e-74 282.3 417 40.8
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.2e-74 282.0 304 49.3
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 8.9e-74 281.2 303 48.2
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.2e-73 280.8 256 53.5
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.5e-73 280.4 256 57.0
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 2.0e-73 280.0 284 50.0
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 4.4e-73 278.9 273 54.6
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.7e-72 276.9 287 50.9
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 3.7e-72 275.8 290 48.6
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 3.7e-72 275.8 265 54.7
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 4.9e-72 275.4 246 57.7
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 6.4e-72 275.0 288 49.3
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 6.4e-72 275.0 296 47.3
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.1e-71 274.2 284 47.9
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 3.2e-71 272.7 289 48.8
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.2e-71 272.7 256 52.3
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 4.1e-71 272.3 244 52.9
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.4e-71 271.9 245 54.7
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 7.1e-71 271.6 290 48.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.7e-70 269.6 293 49.5
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 7.8e-70 268.1 345 44.3
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 3.9e-69 265.8 280 47.5
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.1e-68 264.2 284 48.2
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 3.3e-68 262.7 181 70.2
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 5.6e-68 261.9 253 51.8
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.8e-67 259.6 263 47.5
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 6.2e-67 258.5 341 43.1
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.1e-66 257.7 263 47.1
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.8e-66 256.9 274 46.0
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.4e-66 256.5 274 46.0
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.4e-66 256.5 274 46.0
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 6.8e-66 255.0 284 44.7
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 4.4e-65 252.3 287 47.4
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.8e-65 251.9 288 47.6
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.7e-64 250.4 291 46.7
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.2e-64 250.0 287 47.0
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.2e-64 250.0 287 47.0
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.1e-63 247.7 287 46.7
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.4e-63 246.5 216 58.3
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 4.6e-62 242.3 285 47.0
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.0e-61 241.1 281 45.2
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.3e-59 234.2 284 45.1
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 4.0e-58 229.2 283 43.1
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 6.9e-58 228.4 223 55.2
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 6.9e-58 228.4 167 66.5
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.4e-55 219.9 167 65.3
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 6.6e-53 211.8 239 48.5
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 6.2e-51 205.3 251 47.0
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.7e-48 197.2 207 48.8
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.1e-47 194.5 140 67.9
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.1e-42 177.9 181 54.1
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.1e-42 177.9 284 39.1
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.8e-42 177.2 154 57.1
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 3.1e-42 176.4 281 39.1
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.0e-40 171.4 183 48.1
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.7e-40 170.6 176 51.7
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 9.3e-39 164.9 183 47.0
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.8e-37 160.6 139 58.3
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.1e-35 153.7 346 30.1
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.8e-35 153.3 128 60.2
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 8.2e-35 151.8 284 35.6
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.1e-34 151.4 173 48.0
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.8e-34 150.6 103 61.2
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.4e-34 150.2 120 59.2
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.9e-33 145.6 420 29.0
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.0e-29 134.8 167 43.1
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.3e-29 133.7 178 42.1
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 8.7e-29 131.7 194 42.3
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.1e-28 131.3 243 33.7
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 4.3e-28 129.4 253 31.2
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 7.7e-25 118.6 86 66.3
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 7.7e-25 118.6 218 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 3.6e-22 109.8 241 28.2
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 6.1e-22 109.0 258 32.9
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.7e-19 100.9 109 49.5
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 3.1e-18 96.7 142 38.0
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 2.0e-17 94.0 200 33.0
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.9e-16 90.1 64 64.1
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.9e-15 87.4 142 33.8
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.9e-15 87.4 142 33.8
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.2e-14 84.7 65 63.1
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.4e-13 81.3 61 59.0
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 1.4e-13 81.3 66 54.5
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 3.0e-13 80.1 260 30.8
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 5.2e-13 79.3 132 31.8
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 8.8e-13 78.6 91 46.2
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 3.3e-12 76.6 122 38.5
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.1e-10 71.6 97 38.1
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 5.0e-08 62.8 86 41.9
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 5.5e-07 59.3 76 40.8
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 5.5e-07 59.3 38 65.8
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.7e-06 57.0 83 37.3
C04p39300 Brassica napus HOM05D004374 ORTHO05D005430 4.7e-06 56.2 75 41.3
BolC4t25497H Brassica oleracea HOM05D004374 ORTHO05D005430 4.7e-06 56.2 75 41.3


User provided reference genes

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