Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 3.7e-127 458.4 260 100.0
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 2.1e-101 372.9 202 94.1
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 2.8e-98 362.5 201 91.5
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.2e-77 293.9 203 77.8
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 8.2e-66 254.6 208 64.9
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.4e-65 253.8 202 66.8
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 1.8e-65 253.4 205 66.8
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 9.1e-65 251.1 197 67.5
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 2.0e-64 250.0 211 64.9
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 3.4e-64 249.2 200 67.5
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 5.9e-64 248.4 201 65.2
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 7.7e-64 248.1 204 65.7
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 7.7e-64 248.1 200 67.0
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 7.7e-64 248.1 199 66.8
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 2.2e-63 246.5 195 66.7
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.9e-63 246.1 199 66.3
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.5e-62 243.0 203 64.5
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 2.5e-62 243.0 205 63.4
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.2e-62 242.3 201 63.7
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 5.5e-62 241.9 200 66.0
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 7.2e-62 241.5 200 65.5
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 9.4e-62 241.1 201 64.7
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 2.7e-61 239.6 192 64.1
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 7.9e-61 238.0 197 65.5
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 2.3e-60 236.5 206 63.6
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.3e-60 236.5 192 65.6
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 3.9e-60 235.7 191 67.5
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 6.7e-60 235.0 196 63.3
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 8.8e-60 234.6 199 65.3
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.5e-59 233.8 191 67.0
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 2.6e-59 233.0 199 63.3
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 4.4e-59 232.3 207 62.8
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 5.7e-59 231.9 202 64.4
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 5.7e-59 231.9 212 59.9
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 9.7e-59 231.1 183 66.1
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.3e-58 230.7 205 62.0
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 1.7e-58 230.3 200 61.5
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 2.2e-58 229.9 209 60.8
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 3.7e-58 229.2 209 60.8
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 6.3e-58 228.4 224 57.6
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 8.2e-58 228.0 216 58.8
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 1.8e-57 226.9 147 76.2
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.8e-57 226.9 191 62.8
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 3.1e-57 226.1 204 60.8
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 6.9e-57 224.9 145 75.2
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 6.9e-57 224.9 194 60.3
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 6.9e-57 224.9 208 60.6
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 1.2e-56 224.2 193 62.2
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 1.5e-56 223.8 195 63.6
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.5e-56 223.8 191 62.3
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.5e-56 223.8 191 62.3
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 2.0e-56 223.4 197 60.4
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 2.0e-56 223.4 203 57.6
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 3.4e-56 222.6 189 63.0
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 3.4e-56 222.6 192 60.4
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.0e-55 221.1 146 73.3
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.0e-55 221.1 198 63.1
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.0e-55 221.1 190 61.6
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 1.0e-55 221.1 206 59.2
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.3e-55 220.7 162 69.1
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.3e-55 220.7 193 61.7
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.7e-55 220.3 200 59.5
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.7e-55 220.3 191 61.8
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 2.9e-55 219.5 211 58.3
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 5.0e-55 218.8 121 84.3
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 6.5e-55 218.4 209 57.4
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.1e-54 217.6 147 72.8
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 1.4e-54 217.2 202 61.4
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 3.2e-54 216.1 205 59.0
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 7.2e-54 214.9 197 59.9
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 9.4e-54 214.5 194 58.8
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 1.2e-53 214.2 155 68.4
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 6.1e-53 211.8 204 58.3
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.0e-52 211.1 205 58.5
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 1.4e-52 210.7 199 58.3
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 1.8e-52 210.3 161 68.9
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 5.2e-52 208.8 163 62.6
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 8.8e-52 208.0 153 68.0
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 1.1e-51 207.6 227 50.7
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 3.3e-51 206.1 138 71.7
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 7.4e-51 204.9 183 60.7
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 1.3e-50 204.1 178 59.0
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.7e-50 203.8 193 57.5
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.7e-50 203.8 145 70.3
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 3.7e-50 202.6 201 57.2
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 8.2e-50 201.4 144 70.1
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 1.4e-49 200.7 138 71.0
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 3.1e-49 199.5 182 56.0
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 3.1e-49 199.5 191 56.5
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 7.0e-49 198.4 180 55.6
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 1.6e-48 197.2 134 70.9
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 2.0e-48 196.8 195 56.4
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 7.7e-48 194.9 121 76.0
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 7.7e-48 194.9 121 76.0
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 7.7e-48 194.9 121 76.0
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 7.7e-48 194.9 121 76.0
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 7.7e-48 194.9 121 76.0
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.3e-47 194.1 181 59.1
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 1.3e-47 194.1 142 66.9
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 1.7e-47 193.7 193 56.0
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 6.5e-47 191.8 183 55.2
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 6.5e-47 191.8 172 57.6
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 8.5e-47 191.4 113 75.2
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.5e-46 190.7 186 55.4
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 1.5e-46 190.7 150 60.0
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 4.2e-46 189.1 209 51.2
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 5.5e-46 188.7 161 56.5
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 7.2e-46 188.3 113 74.3
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 1.2e-45 187.6 179 58.1
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 8.0e-45 184.9 174 58.6
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.0e-44 184.5 109 78.0
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.8e-44 183.7 109 78.0
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 2.3e-44 183.3 175 59.4
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 5.7e-43 178.7 147 59.2
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.3e-42 177.6 139 62.6
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 8.2e-42 174.9 177 51.4
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 2.4e-41 173.3 108 73.1
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 2.7e-40 169.9 113 67.3
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.7e-39 167.2 169 55.0
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 4.2e-38 162.5 141 56.0
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 2.7e-32 143.3 117 62.4
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.7e-31 140.6 151 49.7
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 4.2e-30 136.0 132 47.7
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 1.2e-29 134.4 109 54.1
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 9.2e-25 118.2 118 49.2
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 1.2e-24 117.9 145 40.0
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 8.6e-15 85.1 89 47.2
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 9.8e-11 71.6 142 40.1


User provided reference genes

Program Settings