Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 3.4e-158 561.6 284 100.0
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 5.3e-143 511.1 284 92.3
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 3.3e-129 465.3 284 83.5
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 1.7e-128 463.0 287 83.6
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 1.3e-104 383.6 258 73.3
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 2.8e-99 365.9 267 68.9
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 3.6e-99 365.5 285 66.7
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.4e-98 363.6 285 66.3
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 2.0e-97 359.8 284 63.4
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 7.5e-97 357.8 282 63.1
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 1.3e-96 357.1 267 68.5
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 2.9e-96 355.9 259 69.9
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 3.7e-96 355.5 271 67.5
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 1.8e-95 353.2 255 67.1
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 1.2e-94 350.5 260 67.7
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 3.5e-94 349.0 261 68.6
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 3.5e-94 349.0 270 66.7
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 5.9e-94 348.2 255 68.6
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 5.9e-94 348.2 253 68.4
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 7.8e-94 347.8 260 68.1
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 1.0e-93 347.4 253 69.6
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 2.3e-93 346.3 252 69.0
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 3.9e-93 345.5 259 67.2
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 1.5e-92 343.6 291 62.5
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.5e-92 342.8 274 63.9
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 2.5e-92 342.8 276 64.9
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.5e-92 342.8 296 60.8
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 7.3e-92 341.3 272 67.6
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 9.5e-92 340.9 275 64.7
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 9.5e-92 340.9 275 64.0
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 9.5e-92 340.9 256 68.4
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 9.5e-92 340.9 296 60.5
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 1.2e-91 340.5 268 64.9
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 3.6e-91 339.0 266 65.8
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 4.7e-91 338.6 275 62.5
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 4.7e-91 338.6 295 59.7
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 6.2e-91 338.2 254 66.9
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 6.2e-91 338.2 272 66.9
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 1.0e-90 337.4 272 66.9
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 1.8e-90 336.7 300 60.0
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 1.8e-90 336.7 265 64.5
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 2.3e-90 336.3 275 63.6
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 4.0e-90 335.5 255 65.9
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 5.2e-90 335.1 290 60.7
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 6.8e-90 334.7 293 59.7
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 6.8e-90 334.7 257 68.5
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 6.8e-90 334.7 262 64.9
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 8.9e-90 334.3 268 64.6
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 1.2e-89 334.0 297 62.0
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 2.0e-89 333.2 264 63.6
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 2.0e-89 333.2 275 62.9
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 4.4e-89 332.0 255 66.3
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 5.8e-89 331.6 264 64.8
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 7.5e-89 331.3 266 63.9
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 7.5e-89 331.3 257 69.3
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 9.8e-89 330.9 279 60.9
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 9.8e-89 330.9 277 62.5
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 1.3e-88 330.5 262 62.6
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 1.7e-88 330.1 252 65.1
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 2.2e-88 329.7 271 65.3
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 2.9e-88 329.3 253 66.4
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 8.3e-88 327.8 280 62.1
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 4.1e-87 325.5 262 61.5
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 9.2e-87 324.3 254 66.9
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 9.2e-87 324.3 274 63.1
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 3.5e-86 322.4 255 63.5
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 4.6e-86 322.0 257 65.8
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 3.0e-85 319.3 277 61.4
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 3.3e-84 315.8 254 65.4
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 4.3e-84 315.5 250 62.4
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 5.6e-84 315.1 274 62.0
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.2e-83 313.9 292 59.9
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 2.1e-83 313.2 254 65.0
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 2.8e-83 312.8 277 58.8
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 4.7e-83 312.0 229 69.0
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 8.1e-83 311.2 252 64.3
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 4.0e-82 308.9 284 58.8
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 5.2e-82 308.5 255 63.9
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 2.6e-81 306.2 230 66.5
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 4.4e-81 305.4 266 61.7
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 9.8e-81 304.3 273 59.0
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 9.8e-81 304.3 253 62.8
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.7e-80 303.5 253 63.6
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 3.7e-80 302.4 228 68.9
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 2.1e-78 296.6 287 55.1
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 6.0e-78 295.0 252 59.1
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 7.8e-78 294.7 275 57.8
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 7.8e-78 294.7 249 61.0
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 2.3e-77 293.1 253 62.1
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 1.9e-76 290.0 256 60.2
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 2.5e-76 289.7 247 59.5
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 1.2e-75 287.3 222 64.9
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 3.6e-75 285.8 211 69.7
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 5.8e-73 278.5 284 54.9
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.1e-71 274.2 240 57.9
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 9.0e-58 228.0 263 47.5
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 9.0e-58 228.0 178 61.8
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 7.9e-54 214.9 168 64.3
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 1.1e-52 211.1 293 40.6
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 1.3e-51 207.6 247 44.1
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 8.1e-51 204.9 239 45.2
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 4.5e-49 199.1 150 68.0
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 9.3e-47 191.4 168 58.3
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 1.9e-44 183.7 293 36.9
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 3.7e-43 179.5 163 59.5
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 1.1e-39 167.9 254 40.9
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 2.1e-38 163.7 255 38.8
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 4.1e-34 149.4 238 35.7
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 2.5e-28 130.2 102 61.8
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.3e-27 127.9 107 59.8
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 3.4e-25 119.8 165 46.1
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 1.9e-23 114.0 120 55.0
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.1e-18 98.2 87 56.3
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 3.8e-08 63.2 110 32.7
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 8.5e-08 62.0 110 31.8
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 1.1e-07 61.6 115 32.2
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.5e-07 61.2 110 30.9
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.5e-07 61.2 110 30.9
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 1.9e-07 60.8 134 30.6
MSTRG.22954 Avicennia marina HOM05D002933 ORTHO05D007742 2.5e-07 60.5 110 31.8
SalBow5G4018 Salvia bowleyana HOM05D002933 ORTHO05D007742 2.5e-07 60.5 110 31.8
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 3.2e-07 60.1 115 30.4
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 3.2e-07 60.1 115 30.4
Cpa.g.sc1.346 Carica papaya HOM05D002933 ORTHO05D007742 3.2e-07 60.1 110 32.7
ClCG09G020230 Citrullus lanatus HOM05D002933 ORTHO05D007742 4.2e-07 59.7 113 30.1
Haze_17012 Corylus avellana HOM05D002933 ORTHO05D007742 4.2e-07 59.7 114 34.2
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 4.2e-07 59.7 112 30.4
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 5.5e-07 59.3 115 30.4
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 5.5e-07 59.3 115 30.4
CsaV3_5G026220 Cucumis sativus L. HOM05D002933 ORTHO05D007742 5.5e-07 59.3 115 30.4
FAN03G0329 Fragaria x ananassa HOM05D002933 ORTHO05D007742 5.5e-07 59.3 99 34.3
Nitab4.5_0001723g0030 Nicotiana tabacum HOM05D002933 ORTHO05D007742 5.5e-07 59.3 110 31.8
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 7.2e-07 58.9 110 30.9
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 9.4e-07 58.5 115 29.6
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 9.4e-07 58.5 115 30.4
FvH4_7g21370 Fragaria vesca HOM05D002933 ORTHO05D007742 9.4e-07 58.5 99 34.3
FAN01G1038 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.4e-07 58.5 99 34.3
FAN06G1816 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.4e-07 58.5 99 34.3
FAN06G3199 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.4e-07 58.5 99 34.3
FAN10G2797 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.4e-07 58.5 99 34.3
Lj1g0025916 Lotus japonicus HOM05D002933 ORTHO05D007742 9.4e-07 58.5 113 30.1
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 9.4e-07 58.5 110 33.6
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 1.2e-06 58.2 115 29.6
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 1.2e-06 58.2 110 32.7
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 1.2e-06 58.2 110 30.9
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 1.2e-06 58.2 111 30.6
Nitab4.5_0001797g0060 Nicotiana tabacum HOM05D002933 ORTHO05D007742 1.2e-06 58.2 110 30.9
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.2e-06 58.2 114 31.6
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 1.6e-06 57.8 112 31.2
Sp5g07140 Schrenkiella parvula HOM05D002933 ORTHO05D007742 1.6e-06 57.8 115 30.4
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 1.6e-06 57.8 97 32.0
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 1.6e-06 57.8 97 32.0
AL5G36450 Arabidopsis lyrata HOM05D002933 ORTHO05D007742 2.1e-06 57.4 115 29.6
Cc11_g04720 Coffea canephora HOM05D002933 ORTHO05D007742 2.1e-06 57.4 110 31.8
RcHm_v2.0_Chr1g0365751 Rosa chinensis HOM05D002933 ORTHO05D007742 2.1e-06 57.4 99 34.3
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 2.1e-06 57.4 111 31.5
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 2.7e-06 57.0 111 32.4
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.7e-06 57.0 110 31.8
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 2.7e-06 57.0 252 24.2
Hund09944 Selenicereus undatus HOM05D002933 ORTHO05D007742 2.7e-06 57.0 97 32.0
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 3.6e-06 56.6 110 29.1
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 3.6e-06 56.6 110 29.1
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 3.6e-06 56.6 97 30.9
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 3.6e-06 56.6 99 30.3
arahy.Tifrunner.gnm1.ann1.55TXVJ Arachis hypogaea HOM05D002933 ORTHO05D007742 4.7e-06 56.2 110 30.0
arahy.Tifrunner.gnm1.ann1.XEQF22 Arachis hypogaea HOM05D002933 ORTHO05D007742 4.7e-06 56.2 110 30.0
ECA246G3602 Erigeron canadensis HOM05D002933 ORTHO05D007742 4.7e-06 56.2 112 33.0
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 4.7e-06 56.2 97 32.0
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 4.7e-06 56.2 97 32.0
AT3G55330 Arabidopsis thaliana HOM05D002933 ORTHO05D007742 6.1e-06 55.8 115 29.6
CDE07G0630 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 6.1e-06 55.8 144 28.5
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 6.1e-06 55.8 110 30.0
Psat6g169400 Pisum sativum HOM05D002933 ORTHO05D007742 6.1e-06 55.8 99 32.3
unitig_52.g17502 Utricularia gibba HOM05D002933 ORTHO05D007742 6.1e-06 55.8 110 32.7
GSVIVG01016618001 Vitis vinifera HOM05D002933 ORTHO05D007742 6.1e-06 55.8 110 30.9
Cfa001530 Carpinus fangiana HOM05D002933 ORTHO05D007742 8.0e-06 55.5 114 31.6
Thecc.10G052500 Theobroma cacao HOM05D002933 ORTHO05D007742 8.0e-06 55.5 134 29.1


User provided reference genes

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