Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003878.2 Cucumis melo HOM05D000625 ORTHO05D000467 0.0e+00 1197.6 630 100.0
CsaV3_3G044920 Cucumis sativus L. HOM05D000625 ORTHO05D000467 2.7e-296 1021.5 628 86.9
Sed0011324 Sechium edule HOM05D000625 ORTHO05D000467 2.8e-213 745.7 638 68.7
ClCG05G019180 Citrullus lanatus HOM05D000853 ORTHO05D000723 8.7e-130 468.4 341 77.4
QL01p055674 Quercus lobata HOM05D000625 ORTHO05D000467 8.9e-82 308.9 642 38.3
QL02p007759 Quercus lobata HOM05D000625 ORTHO05D000467 8.9e-82 308.9 642 38.3
Haze_17633 Corylus avellana HOM05D000625 ORTHO05D000467 7.5e-73 279.3 650 36.6
MD15G1029200 Malus domestica HOM05D000625 ORTHO05D000467 2.9e-72 277.3 655 37.9
Manes.18G029100 Manihot esculenta HOM05D000625 ORTHO05D000467 6.4e-72 276.2 637 36.4
Cfa018430 Carpinus fangiana HOM05D000625 ORTHO05D000467 7.3e-68 262.7 650 35.7
Atru.chr13.521_Atru.chr13.522 Acer truncatum HOM05D000625 ORTHO05D000467 5.2e-66 256.5 650 36.5
Atru.chr13.527_Atru.chr13.528 Acer truncatum HOM05D000625 ORTHO05D000467 5.2e-66 256.5 650 36.5
Prupe.1G382200 Prunus persica HOM05D000625 ORTHO05D000467 2.6e-65 254.2 641 36.0
Sabra02G0104700 Salix brachista HOM05D000625 ORTHO05D000467 1.1e-63 248.8 643 36.5
Potri.002G134300 Populus trichocarpa HOM05D000625 ORTHO05D000467 4.1e-63 246.9 648 37.5
Duzib116G0669 Durio zibethinus HOM05D000625 ORTHO05D000467 2.7e-62 244.2 657 36.2
Cpa.g.sc64.62 Carica papaya HOM05D000625 ORTHO05D000467 4.6e-62 243.4 627 36.7
Sabra14G0030900 Salix brachista HOM05D000625 ORTHO05D000467 1.3e-61 241.9 637 35.0
TAR376G0269 Trochodendron aralioides HOM05D000625 ORTHO05D000467 2.3e-61 241.1 666 35.0
MD08G1032500 Malus domestica HOM05D000625 ORTHO05D000467 3.9e-61 240.4 639 35.4
Thecc.08G023300 Theobroma cacao HOM05D000625 ORTHO05D000467 8.6e-61 239.2 624 37.0
COL.COLO4_26354 Corchorus olitorius HOM05D000625 ORTHO05D000467 2.1e-59 234.6 644 34.0
GSVIVG01009663001 Vitis vinifera HOM05D000625 ORTHO05D000467 4.7e-59 233.4 660 35.6
CiPaw.15G074300 Carya illinoinensis HOM05D000625 ORTHO05D000467 6.2e-59 233.0 641 34.5
FAN27G3485 Fragaria x ananassa HOM05D000625 ORTHO05D000467 6.2e-59 233.0 679 36.5
Eucgr.F01546 Eucalyptus grandis HOM05D000625 ORTHO05D000467 2.3e-58 231.1 666 34.7
FAN20G0050 Fragaria x ananassa HOM05D000625 ORTHO05D000467 3.1e-58 230.7 685 36.5
Potri.014G042600 Populus trichocarpa HOM05D000625 ORTHO05D000467 1.5e-57 228.4 636 33.5
TAR628G0949 Trochodendron aralioides HOM05D000625 ORTHO05D000467 7.6e-57 226.1 687 33.6
MBI16_g43107_MAGBIO Magnolia biondii HOM05D000625 ORTHO05D000467 4.1e-55 220.3 652 32.4
Ciclev10000407m.g Citrus clementina HOM05D000625 ORTHO05D000467 2.7e-54 217.6 624 35.9
FvH4_2g40090 Fragaria vesca HOM05D000625 ORTHO05D000467 1.3e-53 215.3 679 34.6
FAN15G2375 Fragaria x ananassa HOM05D000625 ORTHO05D000467 1.5e-52 211.8 678 33.6
vmacro21623 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 4.0e-50 203.8 655 35.0
Nn5g29524 Nelumbo nucifera HOM05D000625 ORTHO05D000467 5.2e-50 203.4 642 32.2
RcHm_v2.0_Chr6g0300651 Rosa chinensis HOM05D000625 ORTHO05D000467 5.2e-50 203.4 665 34.0
Dinv39395 Davidia involucrata HOM05D000625 ORTHO05D000467 8.9e-50 202.6 658 32.8
Cc10_g03210 Coffea canephora HOM05D000625 ORTHO05D000467 2.1e-46 191.4 637 32.5
PGR083G2524 Punica granatum HOM05D000625 ORTHO05D000467 7.8e-46 189.5 624 34.1
TWI36G1344 Tripterygium wilfordii HOM05D000625 ORTHO05D000467 3.0e-45 187.6 566 34.6
CSS0028030 Camellia sinensis var. sinensis HOM05D000808 ORTHO05D000863 3.9e-45 187.2 624 33.0
Manes.05G162500 Manihot esculenta HOM05D000625 ORTHO05D000467 8.7e-45 186.0 627 33.7
Rhsim06G0035600 Rhododendron simsii HOM05D000625 ORTHO05D000467 1.1e-44 185.7 652 35.0
Peaxi162Scf00057g00427 Petunia axillaris HOM05D000625 ORTHO05D000467 6.2e-43 179.9 601 31.6
Lj4A43T54 Lonicera japonica HOM05D000625 ORTHO05D000467 1.1e-42 179.1 654 32.7
Gohir.A01G117000 Gossypium hirsutum HOM05D000625 ORTHO05D000467 1.4e-42 178.7 556 32.9
Actinidia15309 Actinidia chinensis HOM05D000625 ORTHO05D000467 4.0e-42 177.2 400 39.0
Gohir.D01G105500 Gossypium hirsutum HOM05D000625 ORTHO05D000467 5.3e-42 176.8 597 32.7
Dinv36053 Davidia involucrata HOM05D000625 ORTHO05D000467 1.2e-41 175.6 453 35.5
CiPaw.16G054700 Carya illinoinensis HOM05D000625 ORTHO05D000467 1.5e-41 175.3 635 31.3
Gorai.002G129400 Gossypium raimondii HOM05D000625 ORTHO05D000467 2.0e-41 174.9 597 32.7
Glyma.06G033700 Glycine max HOM05D000625 ORTHO05D000467 4.5e-41 173.7 640 31.7
CANSAT54G1980 Cannabis sativa HOM05D000625 ORTHO05D000467 9.9e-41 172.6 644 31.8
Sopen04g033630 Solanum pennellii HOM05D000625 ORTHO05D000467 4.9e-40 170.2 674 29.4
Solyc04g080040.3 Solanum lycopersicum HOM05D000625 ORTHO05D000467 6.4e-40 169.9 674 30.0
arahy.Tifrunner.gnm1.ann1.ATF0F7 Arachis hypogaea HOM05D000625 ORTHO05D000467 2.4e-39 167.9 593 32.9
Sc15g0006820 Simmondsia chinensis HOM05D000625 ORTHO05D000467 4.2e-39 167.2 664 30.4
Nitab4.5_0003246g0080 Nicotiana tabacum HOM05D000625 ORTHO05D000467 9.3e-39 166.0 667 30.0
arahy.Tifrunner.gnm1.ann1.1U7IT4 Arachis hypogaea HOM05D000625 ORTHO05D000467 6.0e-38 163.3 603 32.5
Gohir.D05G199000 Gossypium hirsutum HOM05D000625 ORTHO05D000467 1.0e-37 162.5 640 30.3
PGSC0003DMG402027859 Solanum tuberosum HOM05D000625 ORTHO05D000467 2.3e-37 161.4 669 29.6
Gorai.009G204200 Gossypium raimondii HOM05D000625 ORTHO05D000467 1.5e-36 158.7 640 29.8
Glyma.04G033500 Glycine max HOM05D000625 ORTHO05D000467 7.4e-36 156.4 604 32.6
PSO170G3223 Papaver somniferum HOM05D000625 ORTHO05D000467 3.6e-35 154.1 641 30.1
Nitab4.5_0000110g0410 Nicotiana tabacum HOM05D000625 ORTHO05D000467 4.8e-35 153.7 670 28.8
PSO700G0331 Papaver somniferum HOM05D000625 ORTHO05D000467 6.2e-35 153.3 644 30.4
Aqoxy5G01685 Aquilegia oxysepala HOM05D000625 ORTHO05D000467 1.8e-34 151.8 443 33.4
Oeu016737.2 Olea europaea HOM05D000625 ORTHO05D000467 2.4e-34 151.4 633 30.3
PGSC0003DMG401027859 Solanum tuberosum HOM05D000625 ORTHO05D000467 6.9e-34 149.8 632 28.8
CAN.G1126.27 Capsicum annuum HOM05D000625 ORTHO05D000467 2.9e-32 144.4 679 27.8
Thhalv10018263m.g Eutrema salsugineum HOM05D000625 ORTHO05D000467 2.4e-31 141.4 612 30.7
Medtr3g111700 Medicago truncatula HOM05D000625 ORTHO05D000467 1.2e-30 139.0 641 28.4
TPR.G12405 Trifolium pratense HOM05D000625 ORTHO05D000467 1.2e-30 139.0 632 30.5
Sp5g30230 Schrenkiella parvula HOM05D000625 ORTHO05D000467 4.6e-30 137.1 653 29.7
Ca_15523_v3 Cicer arietinum L. HOM05D000625 ORTHO05D000467 6.0e-30 136.7 594 30.1
Actinidia22562 Actinidia chinensis HOM05D000625 ORTHO05D000467 7.9e-30 136.3 641 29.6
Phvul.009G056700 Phaseolus vulgaris HOM05D000625 ORTHO05D000467 7.9e-30 136.3 654 30.3
MSTRG.25152 Avicennia marina HOM05D000625 ORTHO05D000467 3.9e-29 134.0 478 32.0
A07p40710 Brassica napus HOM05D000625 ORTHO05D000467 1.9e-28 131.7 267 40.8
BraA07t31615Z Brassica rapa HOM05D000625 ORTHO05D000467 1.9e-28 131.7 267 40.8
Aa31LG4G5300 Aethionema arabicum HOM05D000625 ORTHO05D000467 2.5e-28 131.3 585 29.2
Lalb_Chr08g0245831 Lupinus albus HOM05D000625 ORTHO05D000467 1.6e-27 128.6 549 29.5
VMungo1309G2141 Vigna mungo HOM05D000625 ORTHO05D000467 1.1e-26 125.9 612 28.9
EL10Ac4g08635 Beta vulgaris HOM05D000625 ORTHO05D000467 1.2e-25 122.5 663 29.6
DCAR_012748 Daucus carota HOM05D000481 ORTHO05D000467 2.0e-25 121.7 636 27.4
C06p49110 Brassica napus HOM05D000625 ORTHO05D000467 1.7e-24 118.6 404 31.9
BcaC08g46974 Brassica carinata HOM05D000625 ORTHO05D000467 2.5e-23 114.8 608 29.1
Hund17650 Selenicereus undatus HOM05D000625 ORTHO05D000467 4.2e-23 114.0 613 29.9
BolC6t39945H Brassica oleracea HOM05D000625 ORTHO05D000467 7.1e-23 113.2 522 30.3
SGA_v2.0_scaffold48G18064 Striga asiatica HOM05D000625 ORTHO05D000467 7.1e-23 113.2 483 27.7
Lj1g0012117 Lotus japonicus HOM05D000625 ORTHO05D000467 1.2e-22 112.5 644 30.4
Psat5g018880 Pisum sativum HOM05D000625 ORTHO05D000467 3.5e-22 110.9 665 26.5
CDE02G4478 Ceratophyllum demersum HOM05D000625 ORTHO05D000467 7.9e-22 109.8 404 32.7
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 1.3e-21 109.0 298 36.2
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 2.3e-21 108.2 564 28.5
BcaB02g06992 Brassica carinata HOM05D000625 ORTHO05D000467 1.9e-20 105.1 269 33.5
CARHR068420 Cardamine hirsuta HOM05D000625 ORTHO05D000467 2.5e-20 104.8 516 30.8
SalBow7G4484 Salvia bowleyana HOM05D000625 ORTHO05D000467 2.5e-20 104.8 619 28.4
THA.LOC104808004 Tarenaya hassleriana HOM05D000625 ORTHO05D000467 2.5e-20 104.8 552 26.3
ATR0733G170 Amborella trichopoda HOM05D000625 ORTHO05D000467 6.3e-19 100.1 612 26.5
BolC6t38406H Brassica oleracea HOM05D000625 ORTHO05D000467 6.3e-19 100.1 270 32.6
ECA232G4440 Erigeron canadensis HOM05D002528 ORTHO05D002922 1.8e-18 98.6 349 30.4
Lsat_1_v5_gn_4_121781 Lactuca sativa HOM05D000625 ORTHO05D000467 1.8e-18 98.6 636 26.3
HanXRQChr09g0268551 Helianthus annuus HOM05D000625 ORTHO05D000467 4.1e-18 97.4 308 33.8
AL2G34990 Arabidopsis lyrata HOM05D000625 ORTHO05D000467 1.2e-17 95.9 661 27.2
AT1G75100 Arabidopsis thaliana HOM05D000625 ORTHO05D000467 1.5e-17 95.5 639 26.1
GSVIVG01018866001 Vitis vinifera HOM05D006805 ORTHO05D008656 5.9e-17 93.6 158 41.8
DCAR_019514 Daucus carota HOM05D000625 ORTHO05D000467 2.2e-16 91.7 632 26.3
CDE01G0044 Ceratophyllum demersum HOM05D000625 ORTHO05D000467 6.5e-16 90.1 170 41.8
HPP92_024904 Vanilla planifolia HOM05D000625 ORTHO05D000467 1.4e-15 89.0 146 43.2
C06p32840 Brassica napus HOM05D002528 ORTHO05D002922 1.9e-15 88.6 498 25.9
AUR62033850 Chenopodium quinoa HOM05D000625 ORTHO05D000467 9.3e-15 86.3 609 25.5
Ah.11g043260 Amaranthus hybridus HOM05D000625 ORTHO05D000467 2.5e-12 78.2 238 32.4
Carub.0002s2188 Capsella rubella HOM05D000625 ORTHO05D000467 2.4e-10 71.6 669 26.3
Migut.C00697 Erythranthe guttata HOM05D000625 ORTHO05D000467 5.3e-10 70.5 620 25.3
Gohir.D06G008800 Gossypium hirsutum HOM05D000625 ORTHO05D000467 5.3e-10 70.5 190 36.8
Gorai.010G011600 Gossypium raimondii HOM05D000625 ORTHO05D000467 5.3e-10 70.5 190 36.8
Os03g0198300 Oryza sativa ssp. japonica HOM05D000625 ORTHO05D000467 6.9e-10 70.1 267 30.3
Lj4A783G82 Lonicera japonica HOM05D000625 ORTHO05D000467 1.5e-09 68.9 617 24.8
Gohir.A06G011400 Gossypium hirsutum HOM05D000625 ORTHO05D000467 1.0e-08 66.2 190 34.7
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 2.2e-08 65.1 457 27.1
unitig_37.g12964 Utricularia gibba HOM05D000625 ORTHO05D000467 2.1e-06 58.5 384 28.6
unitig_749.g13844 Utricularia gibba HOM05D000625 ORTHO05D000467 3.6e-06 57.8 283 26.9


User provided reference genes

Program Settings