Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 8.2e-109 397.1 209 100.0
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 2.3e-79 299.3 167 95.2
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 8.6e-74 280.8 168 89.3
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.0e-66 257.3 167 80.2
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.9e-65 253.1 167 78.4
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.9e-65 253.1 167 79.0
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 4.3e-65 251.9 167 78.4
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 7.3e-65 251.1 167 78.4
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 7.3e-65 251.1 167 79.0
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 6.2e-64 248.1 167 77.8
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 1.4e-63 246.9 167 77.2
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 2.3e-63 246.1 167 76.6
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 4.0e-63 245.4 167 75.4
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 5.2e-63 245.0 169 75.7
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 1.2e-62 243.8 168 76.2
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.2e-62 243.8 169 76.3
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.2e-62 243.8 169 75.7
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 1.2e-62 243.8 167 77.2
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.2e-62 243.8 169 78.1
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 1.5e-62 243.4 168 75.6
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 2.0e-62 243.0 168 76.8
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 2.6e-62 242.7 169 76.3
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 7.5e-62 241.1 168 75.0
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 9.8e-62 240.7 167 75.4
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 9.8e-62 240.7 168 75.0
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 1.3e-61 240.4 171 74.9
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 2.2e-61 239.6 171 74.3
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 2.2e-61 239.6 167 74.9
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 2.9e-61 239.2 183 71.0
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.9e-61 239.2 168 75.6
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 4.9e-61 238.4 169 75.1
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 6.4e-61 238.0 169 74.6
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 6.4e-61 238.0 169 74.6
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 6.4e-61 238.0 170 74.1
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 8.3e-61 237.7 167 75.4
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 8.3e-61 237.7 167 75.4
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 1.1e-60 237.3 169 74.0
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-60 237.3 169 74.0
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-60 237.3 169 74.0
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-60 237.3 169 74.0
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 1.1e-60 237.3 169 74.0
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 1.9e-60 236.5 169 74.6
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.9e-60 236.5 167 74.9
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.9e-60 236.5 167 71.9
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 2.4e-60 236.1 167 71.9
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 2.4e-60 236.1 167 71.9
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 3.2e-60 235.7 171 74.3
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 9.2e-60 234.2 168 75.0
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 9.2e-60 234.2 168 75.0
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 9.2e-60 234.2 168 74.4
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.2e-59 233.8 169 72.2
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 1.6e-59 233.4 167 74.3
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 2.1e-59 233.0 161 75.8
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 2.1e-59 233.0 168 75.6
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 2.1e-59 233.0 170 73.5
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 2.7e-59 232.6 168 73.2
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 2.7e-59 232.6 168 73.8
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 3.5e-59 232.3 164 74.4
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 3.5e-59 232.3 170 73.5
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 3.5e-59 232.3 169 70.4
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 4.6e-59 231.9 171 73.7
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 6.0e-59 231.5 169 72.8
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 6.0e-59 231.5 168 74.4
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 6.0e-59 231.5 168 72.6
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 7.8e-59 231.1 171 73.7
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 7.8e-59 231.1 169 76.3
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 7.8e-59 231.1 169 71.0
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.0e-58 230.7 171 73.1
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 1.0e-58 230.7 168 74.4
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 1.3e-58 230.3 170 73.5
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 1.3e-58 230.3 169 72.2
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 1.7e-58 229.9 171 73.1
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 1.7e-58 229.9 171 73.1
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 1.7e-58 229.9 169 72.8
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 1.7e-58 229.9 168 72.6
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 1.7e-58 229.9 169 72.8
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 2.3e-58 229.6 168 73.2
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 2.3e-58 229.6 168 72.6
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 2.3e-58 229.6 170 72.9
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 2.3e-58 229.6 170 72.9
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 2.3e-58 229.6 170 72.9
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 3.0e-58 229.2 169 74.0
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 3.0e-58 229.2 167 69.5
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 3.9e-58 228.8 169 73.4
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 5.1e-58 228.4 169 72.8
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 6.6e-58 228.0 168 71.4
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 6.6e-58 228.0 167 72.5
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 8.6e-58 227.6 169 72.8
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 8.6e-58 227.6 168 72.0
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 8.6e-58 227.6 168 70.8
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.1e-57 227.3 172 72.7
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.1e-57 227.3 171 71.3
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 1.9e-57 226.5 167 74.3
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 3.3e-57 225.7 176 71.0
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 3.3e-57 225.7 169 70.4
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 3.3e-57 225.7 169 69.2
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 4.3e-57 225.3 167 70.7
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 4.3e-57 225.3 163 69.9
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 7.3e-57 224.6 167 68.3
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 7.3e-57 224.6 172 70.3
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 7.3e-57 224.6 169 68.6
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 9.5e-57 224.2 169 69.8
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 9.5e-57 224.2 164 72.0
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.2e-56 223.8 171 71.9
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 1.2e-56 223.8 169 69.8
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.6e-56 223.4 170 71.8
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 2.1e-56 223.0 161 75.2
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.8e-56 222.6 173 70.5
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 3.6e-56 222.2 167 71.3
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 6.2e-56 221.5 169 69.2
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.1e-55 220.7 168 72.6
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 1.4e-55 220.3 167 69.5
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.4e-55 220.3 172 71.5
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 3.1e-55 219.2 167 67.7
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 4.0e-55 218.8 153 75.8
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.5e-54 216.9 165 69.7
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 2.0e-54 216.5 168 68.5
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 2.0e-54 216.5 169 69.2
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 9.9e-54 214.2 169 68.6
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 1.3e-53 213.8 170 70.6
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 4.9e-53 211.8 163 65.6
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 6.4e-53 211.5 168 66.7
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 8.3e-53 211.1 156 67.9
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 8.3e-53 211.1 168 67.3
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.4e-52 209.5 169 66.9
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 2.4e-52 209.5 168 66.7
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.6e-51 206.8 167 65.9
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.6e-51 206.8 167 64.7
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 3.0e-50 202.6 170 64.7
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 5.1e-50 201.8 167 64.7
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 2.5e-49 199.5 161 65.8
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 2.5e-49 199.5 175 63.4
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 2.5e-49 199.5 175 63.4
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 1.2e-48 197.2 170 64.7
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 1.8e-47 193.4 146 71.9
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 4.0e-47 192.2 171 62.0
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 6.8e-47 191.4 169 63.9
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 1.5e-46 190.3 170 61.8
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 4.9e-45 185.3 102 85.3
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.4e-44 183.0 102 84.3
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 5.1e-42 175.3 100 82.0
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 4.3e-41 172.2 168 60.1
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 1.3e-40 170.6 100 79.0
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 8.1e-40 167.9 168 60.7
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 1.8e-39 166.8 169 58.6
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 2.4e-39 166.4 173 53.8
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.2e-37 159.8 143 62.2
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.9e-36 156.8 217 47.5
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 2.5e-33 146.4 174 47.7
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 3.3e-33 146.0 174 45.4
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.3e-32 144.1 172 46.5
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.4e-31 139.8 169 46.2
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.5e-30 137.1 168 44.6
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 1.7e-29 133.7 145 54.5
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 5.1e-26 122.1 165 47.9
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 6.7e-26 121.7 133 48.9
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 8.7e-26 121.3 173 47.4
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.5e-25 119.8 70 78.6
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.1e-24 116.7 70 75.7
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 1.1e-23 114.4 178 46.6
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 1.4e-23 114.0 168 44.0
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.2e-19 100.9 67 71.6
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.6e-19 99.0 82 61.0
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.0e-13 81.3 44 81.8
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 3.3e-09 66.2 69 63.8
TAR628G0544 Trochodendron aralioides HOM05D004247 ORTHO05D004994 4.5e-06 55.8 64 54.7


User provided reference genes

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