Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 1.5e-155 553.1 340 100.0
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 3.7e-135 485.3 345 89.9
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 5.6e-123 444.9 357 82.9
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 1.5e-96 357.1 341 73.6
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 2.4e-73 280.0 265 62.6
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 9.0e-73 278.1 261 65.1
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 4.2e-70 269.2 271 64.2
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 5.5e-70 268.9 292 55.1
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 7.9e-69 265.0 342 56.4
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 1.1e-67 261.2 265 59.6
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 2.8e-66 256.5 268 59.7
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 3.7e-66 256.1 278 62.9
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 4.8e-66 255.8 315 56.5
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 6.3e-66 255.4 261 59.8
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 5.3e-65 252.3 309 60.8
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 1.2e-64 251.1 359 52.6
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 1.2e-64 251.1 265 61.5
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 1.5e-64 250.8 262 57.6
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 2.0e-64 250.4 258 56.6
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 2.0e-64 250.4 360 54.4
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.0e-64 250.4 356 54.5
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 2.6e-64 250.0 267 64.8
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 1.0e-63 248.1 268 61.6
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 1.0e-63 248.1 274 58.8
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 1.0e-63 248.1 364 53.3
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 1.7e-63 247.3 280 62.1
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 1.7e-63 247.3 280 62.1
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.2e-63 246.9 362 50.8
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 2.9e-63 246.5 274 59.5
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 5.0e-63 245.7 267 58.4
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 5.0e-63 245.7 293 50.9
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 5.0e-63 245.7 261 54.8
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 1.9e-62 243.8 294 59.2
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 1.9e-62 243.8 273 61.5
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 4.2e-62 242.7 321 48.0
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 5.5e-62 242.3 324 46.9
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 5.5e-62 242.3 310 55.8
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 7.2e-62 241.9 265 63.0
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 9.4e-62 241.5 266 56.0
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 3.6e-61 239.6 269 56.9
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 4.7e-61 239.2 292 60.6
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 1.8e-60 237.3 304 53.3
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 1.8e-60 237.3 329 48.6
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 6.7e-60 235.3 283 58.3
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 8.8e-60 235.0 275 50.2
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 8.8e-60 235.0 293 58.7
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 8.8e-60 235.0 331 49.8
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 1.5e-59 234.2 341 49.6
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 3.3e-59 233.0 306 55.9
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 7.4e-59 231.9 262 61.1
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 1.3e-58 231.1 256 58.2
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 1.3e-58 231.1 267 53.6
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 1.3e-58 231.1 270 57.4
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 2.2e-58 230.3 259 64.1
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 3.7e-58 229.6 275 55.6
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 6.3e-58 228.8 263 60.1
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 8.2e-58 228.4 258 52.7
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 8.2e-58 228.4 323 45.5
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 1.8e-57 227.3 262 62.2
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 1.8e-57 227.3 261 62.8
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 1.8e-57 227.3 254 60.2
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 2.4e-57 226.9 259 60.6
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 2.4e-57 226.9 266 50.4
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 2.4e-57 226.9 269 56.5
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 3.1e-57 226.5 265 52.5
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 1.2e-56 224.6 275 55.3
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 1.5e-56 224.2 285 57.5
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 2.6e-56 223.4 304 47.0
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 3.5e-56 223.0 260 51.9
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 4.5e-56 222.6 274 51.1
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 5.9e-56 222.2 249 60.2
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 5.9e-56 222.2 254 59.1
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 5.9e-56 222.2 268 57.1
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 1.7e-55 220.7 249 60.2
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 2.2e-55 220.3 256 60.2
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 6.5e-55 218.8 259 57.1
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 1.5e-54 217.6 273 53.5
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.5e-54 216.9 258 62.4
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 3.2e-54 216.5 259 55.6
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 4.2e-54 216.1 247 56.7
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 1.2e-53 214.5 303 48.5
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 1.2e-53 214.5 304 50.7
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 1.6e-53 214.2 255 50.6
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 2.1e-53 213.8 263 54.8
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 2.7e-53 213.4 267 55.8
CiPaw.08G012700 Carya illinoinensis HOM05D006924 ORTHO05D008218 1.4e-52 211.1 265 58.5
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 6.7e-52 208.8 264 50.0
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 8.8e-52 208.4 263 53.2
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 1.1e-51 208.0 267 50.2
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 2.0e-51 207.2 250 54.0
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 7.5e-51 205.3 251 53.0
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 1.4e-49 201.1 374 47.6
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 7.0e-49 198.7 266 47.0
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 7.0e-49 198.7 177 58.2
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 8.0e-45 185.3 324 44.4
Haze_21546 Corylus avellana HOM05D006924 ORTHO05D008218 5.2e-44 182.6 305 53.1
PGR044G1352 Punica granatum HOM05D006924 ORTHO05D008218 1.5e-43 181.0 270 53.0
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 3.7e-42 176.4 162 64.8
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 1.8e-41 174.1 150 62.7
Lj7C719T2 Lonicera japonica HOM05D006924 ORTHO05D008218 4.1e-41 172.9 226 60.2
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 2.5e-38 163.7 148 62.8
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 1.7e-31 141.0 122 61.5
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 1.0e-28 131.7 259 37.1
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 8.3e-26 122.1 278 41.0
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 1.2e-24 118.2 275 34.5
Atru.chr7.2280 Acer truncatum HOM05D006924 ORTHO05D008218 3.4e-19 100.1 112 52.7
SEGI_32810 Sequoiadendron giganteum HOM05D006924 ORTHO05D008218 4.6e-16 89.7 232 34.5
Atru.chr10.503 Acer truncatum HOM05D006924 ORTHO05D008218 4.3e-14 83.2 308 29.2
Haze_21544 Corylus avellana HOM05D006924 ORTHO05D008218 2.8e-13 80.5 56 69.6
Hma1.2p1_0000F.1_g000370 Hydrangea macrophylla HOM05D006924 ORTHO05D008218 4.9e-10 69.7 105 60.0
Nn2g11969 Nelumbo nucifera HOM05D006924 ORTHO05D008218 8.3e-10 68.9 180 34.4
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 1.4e-09 68.2 56 50.0
TPR.G28713 Trifolium pratense HOM05D006924 ORTHO05D008218 4.1e-09 66.6 45 57.8
Atru.chr1.1063 Acer truncatum HOM05D006924 ORTHO05D008218 6.0e-08 62.8 85 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1808 Anthoceros agrestis HOM05D006924 ORTHO05D008218 6.0e-08 62.8 139 35.3
C09p65600 Brassica napus HOM05D000552 ORTHO05D003270 2.3e-07 60.8 112 54.5


User provided reference genes

Program Settings