Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003665.2 Cucumis melo HOM05D002602 ORTHO05D002661 4.9e-63 245.4 257 100.0
CsaV3_3G046710 Cucumis sativus L. HOM05D002602 ORTHO05D002661 4.8e-34 149.1 184 91.3
ClCG05G017230 Citrullus lanatus HOM05D002602 ORTHO05D002661 6.5e-31 138.7 184 91.3
Sed0014074 Sechium edule HOM05D002602 ORTHO05D002661 3.3e-27 126.3 185 70.3
Duzib187G0766 Durio zibethinus HOM05D002602 ORTHO05D002661 4.2e-22 109.4 184 63.6
Gohir.D13G209200 Gossypium hirsutum HOM05D002602 ORTHO05D002661 4.2e-22 109.4 186 62.4
Gorai.013G238300 Gossypium raimondii HOM05D002602 ORTHO05D002661 4.2e-22 109.4 186 62.4
Gohir.A13G203900 Gossypium hirsutum HOM05D002602 ORTHO05D002661 4.6e-21 105.9 186 62.9
Manes.16G068400 Manihot esculenta HOM05D002602 ORTHO05D002661 1.4e-20 104.4 187 71.1
Duzib168G0558 Durio zibethinus HOM05D002602 ORTHO05D002661 3.9e-20 102.8 184 66.8
Manes.16G068500 Manihot esculenta HOM05D002602 ORTHO05D002661 5.1e-20 102.4 187 70.1
Duzib150G1692 Durio zibethinus HOM05D002602 ORTHO05D002661 8.8e-20 101.7 184 60.9
COL.COLO4_24069 Corchorus olitorius HOM05D002602 ORTHO05D002661 2.6e-19 100.1 186 65.1
Haze_21626 Corylus avellana HOM05D002602 ORTHO05D002661 2.6e-19 100.1 187 79.7
Gohir.D08G257800 Gossypium hirsutum HOM05D002602 ORTHO05D002661 4.4e-19 99.4 184 65.8
Gorai.004G274800 Gossypium raimondii HOM05D002602 ORTHO05D002661 2.2e-18 97.1 184 67.4
Hma1.2p1_0175F.1_g077310 Hydrangea macrophylla HOM05D002602 ORTHO05D002661 2.2e-18 97.1 190 58.4
Gohir.A08G237200 Gossypium hirsutum HOM05D002602 ORTHO05D002661 2.8e-18 96.7 184 61.4
Dinv35879 Davidia involucrata HOM05D002602 ORTHO05D002661 1.4e-17 94.4 184 54.3
FAN20G3150 Fragaria x ananassa HOM05D002602 ORTHO05D002661 1.4e-17 94.4 185 60.0
FAN27G2877 Fragaria x ananassa HOM05D002602 ORTHO05D002661 1.4e-17 94.4 185 60.0
Potri.006G246300 Populus trichocarpa HOM05D002602 ORTHO05D002661 1.4e-17 94.4 185 61.1
FvH4_2g30190 Fragaria vesca HOM05D002602 ORTHO05D002661 3.1e-17 93.2 185 61.6
CiPaw.08G015900 Carya illinoinensis HOM05D002602 ORTHO05D002661 4.1e-17 92.8 188 64.9
Gorai.009G011900 Gossypium raimondii HOM05D002602 ORTHO05D002661 4.1e-17 92.8 184 60.9
RcHm_v2.0_Chr6g0312721 Rosa chinensis HOM05D002602 ORTHO05D002661 4.1e-17 92.8 187 62.0
Medtr3g108100 Medicago truncatula HOM05D002602 ORTHO05D002661 9.1e-17 91.7 190 60.0
MD15G1114900 Malus domestica HOM05D002602 ORTHO05D002661 1.5e-16 90.9 187 64.7
Sed0025801 Sechium edule HOM05D002602 ORTHO05D002661 2.6e-16 90.1 53 88.7
Actinidia14641 Actinidia chinensis HOM05D002250 ORTHO05D002393 4.5e-16 89.4 184 51.1
CiPaw.07G217400 Carya illinoinensis HOM05D002602 ORTHO05D002661 4.5e-16 89.4 186 64.5
Gohir.D05G011600 Gossypium hirsutum HOM05D002602 ORTHO05D002661 4.5e-16 89.4 184 60.9
Potri.018G034800 Populus trichocarpa HOM05D002602 ORTHO05D002661 4.5e-16 89.4 185 63.8
VMungo1309G1769 Vigna mungo HOM05D002602 ORTHO05D002661 4.5e-16 89.4 184 65.2
Lj7A711G44 Lonicera japonica HOM05D002602 ORTHO05D002661 5.0e-15 85.9 189 51.9
Dinv30216 Davidia involucrata HOM05D002602 ORTHO05D002661 6.5e-15 85.5 190 56.8
Migut.E01502 Erythranthe guttata HOM05D002602 ORTHO05D002661 6.5e-15 85.5 182 57.7
GSVIVG01035728001 Vitis vinifera HOM05D002602 ORTHO05D002661 8.5e-15 85.1 193 55.4
Prupe.1G466300 Prunus persica HOM05D002602 ORTHO05D002661 1.1e-14 84.7 187 59.9
Sabra18G0035600 Salix brachista HOM05D002602 ORTHO05D002661 1.4e-14 84.3 185 57.3
QL12p031218 Quercus lobata HOM05D002602 ORTHO05D002661 3.2e-14 83.2 173 67.6
Phvul.009G098300 Phaseolus vulgaris HOM05D002602 ORTHO05D002661 4.2e-14 82.8 182 61.0
Hund03001 Selenicereus undatus HOM05D002602 ORTHO05D002661 5.5e-14 82.4 191 59.2
Ca_15695_v3 Cicer arietinum L. HOM05D002602 ORTHO05D002661 7.2e-14 82.0 184 56.5
Gohir.A05G010900 Gossypium hirsutum HOM05D002602 ORTHO05D002661 7.2e-14 82.0 184 58.2
Lalb_Chr23g0269011 Lupinus albus HOM05D002602 ORTHO05D002661 7.2e-14 82.0 185 63.8
Sopen08g021800 Solanum pennellii HOM05D002602 ORTHO05D002661 7.2e-14 82.0 186 55.9
TPR.G34682 Trifolium pratense HOM05D002602 ORTHO05D002661 9.4e-14 81.6 187 58.8
SGA_v2.0_scaffold169G38633 Striga asiatica HOM05D002602 ORTHO05D002661 1.6e-13 80.9 178 52.8
vmacro05448 Vaccinium macrocarpon HOM05D002602 ORTHO05D002661 1.6e-13 80.9 190 50.5
Actinidia15713 Actinidia chinensis HOM05D002602 ORTHO05D002661 2.1e-13 80.5 184 44.0
BcaC07g40851 Brassica carinata HOM05D002602 ORTHO05D002661 2.1e-13 80.5 178 65.7
BolC8t51421H Brassica oleracea HOM05D002602 ORTHO05D002661 2.1e-13 80.5 178 65.7
Eucgr.L02512 Eucalyptus grandis HOM05D002602 ORTHO05D002661 2.1e-13 80.5 186 59.1
Actinidia13423 Actinidia chinensis HOM05D002250 ORTHO05D002393 4.7e-13 79.3 187 55.6
EL10Ac2g02533 Beta vulgaris HOM05D002602 ORTHO05D002661 6.1e-13 79.0 187 54.5
C08p38490 Brassica napus HOM05D002602 ORTHO05D002661 6.1e-13 79.0 178 66.3
Atru.chr7.2321 Acer truncatum HOM05D002602 ORTHO05D002661 7.9e-13 78.6 54 79.6
MSTRG.1648 Avicennia marina HOM05D002602 ORTHO05D002661 7.9e-13 78.6 185 57.3
Glyma.04G072600 Glycine max HOM05D002602 ORTHO05D002661 7.9e-13 78.6 183 59.0
TAR383G0480 Trochodendron aralioides HOM05D002602 ORTHO05D002661 7.9e-13 78.6 189 56.6
AT4G32610 Arabidopsis thaliana HOM05D002602 ORTHO05D002661 1.0e-12 78.2 56 76.8
Carub.0007s0793 Capsella rubella HOM05D002602 ORTHO05D002661 1.0e-12 78.2 56 76.8
Actinidia20335 Actinidia chinensis HOM05D002602 ORTHO05D002661 1.4e-12 77.8 184 56.0
Actinidia09399 Actinidia chinensis HOM05D002602 ORTHO05D002661 2.3e-12 77.0 188 56.9
Glyma.06G073800 Glycine max HOM05D002602 ORTHO05D002661 2.3e-12 77.0 187 62.0
Aqoxy7G01832 Aquilegia oxysepala HOM05D002602 ORTHO05D002661 3.0e-12 76.6 185 53.5
CAN.G21.20 Capsicum annuum HOM05D002602 ORTHO05D002661 3.0e-12 76.6 187 56.1
Ciclev10008908m.g Citrus clementina HOM05D002602 ORTHO05D002661 3.0e-12 76.6 189 60.3
THA.LOC104803817 Tarenaya hassleriana HOM05D002602 ORTHO05D002661 3.0e-12 76.6 52 76.9
Psat5g026840 Pisum sativum HOM05D002602 ORTHO05D002661 3.9e-12 76.3 181 56.9
SGA_v2.0_scaffold163G38094 Striga asiatica HOM05D002250 ORTHO05D002393 3.9e-12 76.3 188 63.3
AL4G17270 Arabidopsis lyrata HOM05D002602 ORTHO05D002661 6.7e-12 75.5 180 72.8
Medtr3g108090 Medicago truncatula HOM05D002602 ORTHO05D002661 6.7e-12 75.5 178 52.8
BcaB03g12754 Brassica carinata HOM05D002602 ORTHO05D002661 8.8e-12 75.1 188 58.5
AUR62024832 Chenopodium quinoa HOM05D002602 ORTHO05D002661 8.8e-12 75.1 184 62.5
Eucgr.C02860 Eucalyptus grandis HOM05D002602 ORTHO05D002661 8.8e-12 75.1 186 57.5
Psat5g026800 Pisum sativum HOM05D002602 ORTHO05D002661 1.1e-11 74.7 144 42.4
AL7G19150 Arabidopsis lyrata HOM05D002602 ORTHO05D002661 1.5e-11 74.3 186 67.2
AT2G25670 Arabidopsis thaliana HOM05D002602 ORTHO05D002661 1.5e-11 74.3 180 71.1
Dinv36599 Davidia involucrata HOM05D002602 ORTHO05D002661 1.5e-11 74.3 185 57.8
Dinv41572 Davidia involucrata HOM05D002602 ORTHO05D002661 1.5e-11 74.3 189 57.7
CSS0048428 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 2.0e-11 73.9 188 53.7
SalBow8G1639 Salvia bowleyana HOM05D002602 ORTHO05D002661 2.0e-11 73.9 188 55.3
PGSC0003DMG400014501 Solanum tuberosum HOM05D002602 ORTHO05D002661 2.0e-11 73.9 176 55.1
TPR.G34689 Trifolium pratense HOM05D002602 ORTHO05D002661 2.0e-11 73.9 179 58.7
Nitab4.5_0000125g0110 Nicotiana tabacum HOM05D002602 ORTHO05D002661 2.6e-11 73.6 186 58.1
Thhalv10025336m.g Eutrema salsugineum HOM05D002602 ORTHO05D002661 4.4e-11 72.8 179 62.6
Oeu010201.1 Olea europaea HOM05D002602 ORTHO05D002661 4.4e-11 72.8 185 63.8
Thecc.09G115400 Theobroma cacao HOM05D002602 ORTHO05D002661 4.4e-11 72.8 184 55.4
A03p61500 Brassica napus HOM05D002602 ORTHO05D002661 7.4e-11 72.0 179 59.8
C07p59270 Brassica napus HOM05D002602 ORTHO05D002661 7.4e-11 72.0 179 64.8
BraA03t15194Z Brassica rapa HOM05D002602 ORTHO05D002661 7.4e-11 72.0 179 59.8
Lalb_Chr07g0178641 Lupinus albus HOM05D002602 ORTHO05D002661 7.4e-11 72.0 183 61.2
BolC7t46373H Brassica oleracea HOM05D002602 ORTHO05D002661 9.7e-11 71.6 179 66.5
Oeu045175.1 Olea europaea HOM05D002602 ORTHO05D002661 9.7e-11 71.6 184 61.4
Sopen08g021810 Solanum pennellii HOM05D002602 ORTHO05D002661 9.7e-11 71.6 185 53.0
Actinidia13291 Actinidia chinensis HOM05D002602 ORTHO05D002661 1.3e-10 71.2 183 42.1
MSTRG.14002 Avicennia marina HOM05D002602 ORTHO05D002661 1.3e-10 71.2 179 57.5
CSS0015478 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 1.3e-10 71.2 172 65.1
Thhalv10000247m.g Eutrema salsugineum HOM05D002602 ORTHO05D002661 1.3e-10 71.2 179 67.6
PGR044G2133 Punica granatum HOM05D002602 ORTHO05D002661 1.3e-10 71.2 179 48.0
CAN.G21.16 Capsicum annuum HOM05D002602 ORTHO05D002661 1.7e-10 70.9 201 51.7
CAN.G21.17 Capsicum annuum HOM05D002602 ORTHO05D002661 1.7e-10 70.9 201 51.7
Solyc08g150138.1 Solanum lycopersicum HOM05D002602 ORTHO05D002661 1.7e-10 70.9 185 53.0
BcaC09g52052 Brassica carinata HOM05D002602 ORTHO05D002661 2.2e-10 70.5 57 71.9
Peaxi162Scf00105g01219 Petunia axillaris HOM05D002602 ORTHO05D002661 2.2e-10 70.5 183 59.0
TAR626G0862 Trochodendron aralioides HOM05D002602 ORTHO05D002661 2.8e-10 70.1 182 46.2
Nitab4.5_0012266g0010 Nicotiana tabacum HOM05D002602 ORTHO05D002661 3.7e-10 69.7 184 60.9
THA.LOC104803776 Tarenaya hassleriana HOM05D002602 ORTHO05D002661 3.7e-10 69.7 50 74.0
Lj1g0024566 Lotus japonicus HOM05D002602 ORTHO05D002661 4.8e-10 69.3 173 61.3
Rhsim02G0187000 Rhododendron simsii HOM05D002602 ORTHO05D002661 4.8e-10 69.3 182 47.3
Carub.0004s0546 Capsella rubella HOM05D002602 ORTHO05D002661 6.3e-10 68.9 47 76.6
Ah.12g063240 Amaranthus hybridus HOM05D002602 ORTHO05D002661 8.2e-10 68.6 188 58.0
Ah.12g063250 Amaranthus hybridus HOM05D002602 ORTHO05D002661 8.2e-10 68.6 50 74.0
SalBow4G3032 Salvia bowleyana HOM05D002602 ORTHO05D002661 8.2e-10 68.6 182 58.8
CSS0041585 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 1.1e-09 68.2 191 53.9
Oeu031564.1 Olea europaea HOM05D002602 ORTHO05D002661 1.1e-09 68.2 184 66.8
QL02p086204 Quercus lobata HOM05D002602 ORTHO05D002661 1.1e-09 68.2 184 60.3
A08p18100 Brassica napus HOM05D002602 ORTHO05D002661 1.8e-09 67.4 49 75.5
C03p87230 Brassica napus HOM05D002602 ORTHO05D002661 1.8e-09 67.4 49 75.5
BolC3t21024H Brassica oleracea HOM05D002602 ORTHO05D002661 1.8e-09 67.4 49 75.5
BraA08t33762Z Brassica rapa HOM05D002602 ORTHO05D002661 1.8e-09 67.4 49 75.5
Lalb_Chr13g0302291 Lupinus albus HOM05D002602 ORTHO05D002661 1.8e-09 67.4 181 51.4
unitig_748.g8208 Utricularia gibba HOM05D002602 ORTHO05D002661 1.8e-09 67.4 177 59.9
Zm00001eb122280 Zea mays HOM05D002602 ORTHO05D002661 1.8e-09 67.4 181 58.6
FAN26G0699 Fragaria x ananassa HOM05D002602 ORTHO05D002661 2.4e-09 67.0 179 54.2
FAN26G2978 Fragaria x ananassa HOM05D002602 ORTHO05D002661 2.4e-09 67.0 179 54.7
CSS0035831 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 3.1e-09 66.6 187 50.8
Glyma.17G120600 Glycine max HOM05D002602 ORTHO05D002661 4.1e-09 66.2 188 63.8
Rhsim03G0245200 Rhododendron simsii HOM05D002602 ORTHO05D002661 4.1e-09 66.2 188 56.9
SGA_v2.0_scaffold163G38096 Striga asiatica HOM05D002602 ORTHO05D002661 4.1e-09 66.2 186 60.2
vmacro06191 Vaccinium macrocarpon HOM05D002602 ORTHO05D002661 4.1e-09 66.2 185 56.8
BcaC01g01010 Brassica carinata HOM05D002602 ORTHO05D002661 5.3e-09 65.9 49 73.5
Duzib168G1527 Durio zibethinus HOM05D002602 ORTHO05D002661 5.3e-09 65.9 187 54.5
FAN28G2603 Fragaria x ananassa HOM05D002602 ORTHO05D002661 5.3e-09 65.9 179 60.3
BcaNung03596 Brassica carinata HOM05D002602 ORTHO05D002661 7.0e-09 65.5 177 65.5
FAN23G0655 Fragaria x ananassa HOM05D002602 ORTHO05D002661 7.0e-09 65.5 179 59.8
MD15G1190400 Malus domestica HOM05D002602 ORTHO05D002661 7.0e-09 65.5 184 61.4
Solyc08g067880.4 Solanum lycopersicum HOM05D002602 ORTHO05D002661 7.0e-09 65.5 43 81.4
HPP92_005547 Vanilla planifolia HOM05D002602 ORTHO05D002661 7.0e-09 65.5 181 52.5
arahy.Tifrunner.gnm1.ann1.43249I Arachis hypogaea HOM05D002602 ORTHO05D002661 9.1e-09 65.1 181 56.9
arahy.Tifrunner.gnm1.ann1.K5A3DB Arachis hypogaea HOM05D002602 ORTHO05D002661 9.1e-09 65.1 181 56.9
Migut.A00271 Erythranthe guttata HOM05D002602 ORTHO05D002661 2.0e-08 63.9 46 76.1
Lalb_Chr12g0197611 Lupinus albus HOM05D002602 ORTHO05D002661 2.0e-08 63.9 183 53.0
RcHm_v2.0_Chr2g0091121 Rosa chinensis HOM05D002602 ORTHO05D002661 2.0e-08 63.9 178 61.2
C01p06340 Brassica napus HOM05D002602 ORTHO05D002661 2.6e-08 63.5 197 62.4
Thecc.09G115500 Theobroma cacao HOM05D002602 ORTHO05D002661 2.6e-08 63.5 187 50.8
Gohir.D07G003800 Gossypium hirsutum HOM05D002602 ORTHO05D002661 3.5e-08 63.2 188 51.1
Atru.chr7.1291 Acer truncatum HOM05D002602 ORTHO05D002661 5.9e-08 62.4 187 55.1
BcaNung04518 Brassica carinata HOM05D002602 ORTHO05D002661 1.0e-07 61.6 169 70.4
CiPaw.03G235600 Carya illinoinensis HOM05D002602 ORTHO05D002661 1.0e-07 61.6 187 57.2
Peaxi162Scf00256g00913 Petunia axillaris HOM05D002602 ORTHO05D002661 1.0e-07 61.6 183 55.7
Gohir.A07G003400 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.3e-07 61.2 188 56.4
TAR636G3129 Trochodendron aralioides HOM05D002602 ORTHO05D002661 1.3e-07 61.2 190 28.4
unitig_0.g2813 Utricularia gibba HOM05D002602 ORTHO05D002661 1.3e-07 61.2 185 34.1
PSO063G7370 Papaver somniferum HOM05D002602 ORTHO05D002661 1.7e-07 60.8 48 64.6
PSO782G3209 Papaver somniferum HOM05D002602 ORTHO05D002661 1.7e-07 60.8 48 64.6
A01p05770 Brassica napus HOM05D002602 ORTHO05D002661 2.2e-07 60.5 57 63.2
Duzib150G1573 Durio zibethinus HOM05D002602 ORTHO05D002661 2.2e-07 60.5 181 54.1
MD02G1062600 Malus domestica HOM05D002602 ORTHO05D002661 2.2e-07 60.5 190 58.4
PGR031G2332 Punica granatum HOM05D002602 ORTHO05D002661 2.2e-07 60.5 184 55.4
TWI34G1255 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 2.2e-07 60.5 188 55.3
TAR624G0315 Trochodendron aralioides HOM05D002602 ORTHO05D002661 2.2e-07 60.5 189 45.5
Gorai.001G003500 Gossypium raimondii HOM05D002602 ORTHO05D002661 5.0e-07 59.3 188 56.4
unitig_747.g21878 Utricularia gibba HOM05D002602 ORTHO05D002661 5.0e-07 59.3 55 65.5
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 6.5e-07 58.9 58 63.8
C01p06130 Brassica napus HOM05D005886 ORTHO05D002661 6.5e-07 58.9 58 63.8
BolC1t00611H Brassica oleracea HOM05D005886 ORTHO05D002661 6.5e-07 58.9 58 63.8
ECA240G4826 Erigeron canadensis HOM05D002602 ORTHO05D002661 6.5e-07 58.9 177 55.4
Os05g0179800 Oryza sativa ssp. japonica HOM05D002602 ORTHO05D002661 6.5e-07 58.9 181 59.7
Solyc05g018490.3 Solanum lycopersicum HOM05D002602 ORTHO05D002661 8.5e-07 58.5 183 38.3
VMungo1215G0338 Vigna mungo HOM05D002602 ORTHO05D002661 8.5e-07 58.5 181 60.8
FvH4_1g05450 Fragaria vesca HOM05D002602 ORTHO05D002661 1.1e-06 58.2 179 58.1
Aa31sc329G20 Aethionema arabicum HOM05D002602 ORTHO05D002661 1.5e-06 57.8 47 66.0
A09p55510 Brassica napus HOM05D002602 ORTHO05D002661 1.5e-06 57.8 161 63.4
BraA09t40953Z Brassica rapa HOM05D002602 ORTHO05D002661 1.5e-06 57.8 161 63.4
TWI63G0040 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 1.5e-06 57.8 188 55.3
CAN.G21.19 Capsicum annuum HOM05D002602 ORTHO05D002661 2.5e-06 57.0 52 65.4
Prupe.7G226700 Prunus persica HOM05D002602 ORTHO05D002661 3.2e-06 56.6 188 59.6
unitig_32.g10925 Utricularia gibba HOM05D002602 ORTHO05D002661 3.2e-06 56.6 52 67.3
Duzib187G1090 Durio zibethinus HOM05D002602 ORTHO05D002661 4.2e-06 56.2 184 52.7
FAN19G2525 Fragaria x ananassa HOM05D002602 ORTHO05D002661 5.5e-06 55.8 178 56.7
Glyma.05G012500 Glycine max HOM05D002602 ORTHO05D002661 5.5e-06 55.8 185 60.0
Oeu019415.1 Olea europaea HOM05D002602 ORTHO05D002661 5.5e-06 55.8 56 58.9
BolC1t00630H Brassica oleracea HOM05D002602 ORTHO05D002661 7.2e-06 55.5 41 73.2
BraA01t00546Z Brassica rapa HOM05D002602 ORTHO05D002661 7.2e-06 55.5 41 73.2
Nitab4.5_0000066g0030 Nicotiana tabacum HOM05D002602 ORTHO05D002661 7.2e-06 55.5 183 56.8
Sopen05g015460 Solanum pennellii HOM05D002602 ORTHO05D002661 7.2e-06 55.5 183 37.2


User provided reference genes

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