Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 3.7e-244 847.8 444 100.0
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 1.1e-219 766.5 449 90.9
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 5.4e-211 737.6 446 88.3
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 4.3e-192 674.9 441 80.3
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 5.4e-142 508.4 376 70.7
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 2.3e-140 503.1 379 68.9
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 1.2e-138 497.3 367 70.6
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 1.6e-138 496.9 373 70.2
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 2.8e-138 496.1 404 67.3
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 7.5e-136 488.0 362 69.9
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 9.8e-136 487.6 363 69.7
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.3e-135 487.3 363 69.7
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 3.7e-135 485.7 375 68.3
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 1.4e-134 483.8 380 66.8
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 1.0e-132 477.6 451 59.4
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 2.3e-132 476.5 372 68.3
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 6.6e-132 474.9 405 64.0
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 1.1e-131 474.2 367 68.1
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 2.5e-131 473.0 390 65.1
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 9.5e-131 471.1 417 61.2
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 1.2e-130 470.7 416 61.3
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 1.4e-129 467.2 376 67.0
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 1.8e-129 466.8 372 66.7
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 4.0e-129 465.7 383 66.1
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 5.2e-129 465.3 396 63.4
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 1.2e-128 464.2 377 66.0
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 1.5e-128 463.8 399 61.9
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 2.0e-128 463.4 338 71.3
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 2.6e-128 463.0 381 64.6
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 3.4e-128 462.6 371 66.8
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 4.4e-128 462.2 389 64.5
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 9.8e-128 461.1 394 63.7
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 2.2e-127 459.9 370 66.5
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 3.7e-127 459.1 369 66.4
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 8.3e-127 458.0 393 62.3
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 1.9e-126 456.8 369 65.9
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 1.9e-126 456.8 372 66.4
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 3.2e-126 456.1 370 66.2
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 4.1e-126 455.7 342 68.7
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 5.4e-126 455.3 373 64.9
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 1.6e-125 453.8 339 68.1
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 1.6e-125 453.8 339 67.8
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 2.7e-125 453.0 382 64.4
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.5e-125 452.6 378 65.1
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 3.5e-125 452.6 376 64.6
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 4.6e-125 452.2 383 62.7
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 4.6e-125 452.2 376 64.6
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 7.8e-125 451.4 382 63.9
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 1.0e-124 451.1 357 65.0
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 2.3e-124 449.9 394 61.9
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 5.1e-124 448.7 381 64.0
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 2.5e-123 446.4 344 68.3
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 2.5e-123 446.4 372 63.7
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 5.6e-123 445.3 420 58.8
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 1.2e-122 444.1 345 68.1
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 1.6e-122 443.7 362 65.2
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 2.1e-122 443.4 345 67.8
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 2.8e-122 443.0 458 55.2
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 6.2e-122 441.8 306 72.9
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 6.2e-122 441.8 371 65.5
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 8.1e-122 441.4 367 62.9
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 1.1e-121 441.0 379 65.2
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 1.1e-121 441.0 342 66.7
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 1.8e-121 440.3 449 57.5
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 1.8e-121 440.3 336 68.2
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 3.1e-121 439.5 341 66.6
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 4.0e-121 439.1 364 62.9
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 4.0e-121 439.1 363 63.4
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 2.0e-120 436.8 383 61.6
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 2.0e-120 436.8 443 57.1
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 1.7e-119 433.7 381 61.4
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 1.7e-119 433.7 375 62.9
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 2.2e-119 433.3 443 56.7
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 2.2e-119 433.3 443 56.7
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 3.7e-119 432.6 341 66.3
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 4.9e-119 432.2 364 63.2
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.1e-118 431.0 354 65.0
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 5.4e-118 428.7 328 66.8
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 1.2e-117 427.6 440 58.2
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 2.1e-117 426.8 430 57.7
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 2.7e-117 426.4 331 66.5
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 6.0e-117 425.2 452 54.6
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 1.0e-116 424.5 382 59.7
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 1.7e-116 423.7 342 65.2
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 6.6e-116 421.8 386 61.1
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 9.6e-115 417.9 369 61.5
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 1.2e-114 417.5 414 57.7
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 4.7e-114 415.6 339 64.9
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 2.2e-111 406.8 385 57.7
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 6.4e-111 405.2 337 62.6
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 4.8e-106 389.0 363 60.9
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 1.9e-99 367.1 295 64.4
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 2.1e-93 347.1 371 54.4
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 1.1e-91 341.3 239 72.8
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 4.5e-88 329.3 261 65.1
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 3.8e-87 326.2 406 49.8
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 6.7e-84 315.5 403 45.2
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 4.3e-83 312.8 340 53.8
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 3.1e-81 306.6 361 49.9
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 2.1e-77 293.9 211 72.0
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 1.7e-71 274.2 201 70.1
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 3.6e-69 266.5 209 68.4
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 6.1e-69 265.8 333 47.7
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 7.9e-69 265.4 331 43.8
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 3.9e-68 263.1 332 46.4
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 1.5e-59 234.6 334 43.4
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.9e-54 217.6 220 51.4
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 3.5e-40 170.2 240 46.2
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 1.0e-36 158.7 176 52.8
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 6.3e-34 149.4 298 35.6
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 4.2e-30 136.7 101 70.3
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 2.3e-23 114.4 338 29.0
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 5.2e-20 103.2 93 59.1
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 3.4e-19 100.5 112 49.1
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 1.3e-18 98.6 102 53.9
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 1.1e-17 95.5 144 43.8
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 1.9e-17 94.7 106 51.9
PRCOL_00003584 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 7.0e-17 92.8 344 27.6
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 4.4e-11 73.6 125 41.6
HanXRQChr08g0214621 Helianthus annuus HOM05D006898 ORTHO05D008506 6.6e-07 59.7 36 69.4


User provided reference genes

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