Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 2.5e-311 1071.2 529 100.0
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.6e-308 1061.2 529 98.7
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 7.5e-308 1059.7 529 98.9
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 2.5e-303 1044.6 529 96.8
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 2.1e-302 1041.6 529 95.7
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 5.0e-280 967.2 527 90.3
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 6.6e-280 966.8 528 90.5
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.9e-279 965.3 533 89.1
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 7.3e-279 963.4 529 89.6
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.2e-278 962.6 529 89.8
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.2e-277 957.2 527 89.6
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 5.2e-277 957.2 527 89.6
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 8.9e-277 956.4 527 89.4
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.2e-276 956.1 533 88.4
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.6e-276 954.9 528 89.0
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 3.4e-276 954.5 531 87.8
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.8e-276 953.7 527 89.4
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.3e-275 952.6 527 89.6
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.2e-275 951.8 528 88.6
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 6.4e-275 950.3 530 88.1
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 6.4e-275 950.3 530 88.1
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 6.4e-275 950.3 528 88.6
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.4e-274 948.3 528 88.4
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 3.2e-274 948.0 528 88.3
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 5.4e-274 947.2 528 88.3
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 4.6e-273 944.1 568 83.8
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 4.6e-273 944.1 533 87.6
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 7.8e-273 943.3 506 90.5
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.3e-272 941.8 528 87.5
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 3.0e-272 941.4 528 87.9
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 6.6e-272 940.3 533 87.2
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 8.6e-272 939.9 503 90.9
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.5e-271 938.3 529 87.0
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.3e-271 937.6 528 87.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 5.6e-271 937.2 528 87.3
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 5.6e-271 937.2 529 87.0
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 7.3e-271 936.8 524 88.0
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.1e-270 935.3 528 86.9
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 4.7e-270 934.1 503 90.1
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 8.1e-270 933.3 519 88.1
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 4.0e-269 931.0 534 85.8
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 5.2e-269 930.6 529 87.1
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.0e-268 928.7 527 85.4
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 2.0e-268 928.7 526 86.7
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 2.0e-268 928.7 528 86.0
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 2.6e-268 928.3 503 89.9
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 5.8e-268 927.2 528 86.2
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 7.5e-268 926.8 528 85.2
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.3e-267 926.0 527 86.7
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.7e-267 925.6 529 86.8
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 2.9e-267 924.9 527 86.0
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 4.9e-267 924.1 527 86.1
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.1e-266 922.9 528 85.6
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.9e-266 922.2 527 87.1
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.4e-266 921.8 524 85.5
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 5.4e-266 920.6 527 85.4
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 5.4e-266 920.6 528 86.0
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 5.4e-266 920.6 532 87.0
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 7.1e-266 920.2 528 85.6
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 6.0e-265 917.1 527 85.0
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 6.0e-265 917.1 527 85.0
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.0e-264 916.4 509 86.8
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.0e-264 916.4 529 86.0
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.7e-264 915.6 529 85.8
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 3.9e-264 914.4 527 84.8
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 3.9e-264 914.4 499 88.8
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 5.1e-264 914.1 527 84.8
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 5.1e-264 914.1 527 84.8
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.1e-263 912.9 511 86.3
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.9e-263 912.1 526 84.8
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.9e-263 912.1 526 85.7
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 2.5e-263 911.8 503 88.1
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 7.3e-263 910.2 528 85.4
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 9.5e-263 909.8 532 83.5
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 9.5e-263 909.8 519 85.4
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.2e-262 909.4 562 81.1
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 2.1e-262 908.7 500 87.4
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 4.7e-262 907.5 527 84.1
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 6.2e-262 907.1 502 87.1
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 6.2e-262 907.1 519 85.7
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 6.2e-262 907.1 527 84.6
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.1e-262 906.7 552 81.9
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.1e-261 906.4 500 88.2
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 1.4e-261 906.0 501 87.0
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.8e-261 905.6 528 84.1
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.8e-261 905.6 537 83.8
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.8e-261 905.6 501 87.0
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.8e-261 905.6 501 87.0
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 6.8e-261 903.7 529 83.4
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 2.0e-260 902.1 528 83.1
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 2.2e-259 898.7 528 82.2
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.4e-258 896.0 529 82.6
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 3.2e-258 894.8 531 82.9
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 7.8e-257 890.2 529 82.8
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.9e-255 885.6 529 82.0
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 2.5e-255 885.2 502 85.9
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 6.2e-254 880.6 530 81.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 8.1e-254 880.2 505 84.2
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.9e-253 877.1 521 82.1
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.5e-252 875.9 513 82.1
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 9.9e-252 873.2 523 79.5
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 2.7e-249 865.1 507 83.6
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 2.7e-249 865.1 507 83.6
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.3e-246 856.3 524 77.9
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.6e-246 855.9 530 77.7
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 3.2e-242 841.6 519 80.0
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.8e-240 835.9 501 81.8
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.3e-239 831.6 530 76.2
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.3e-238 829.7 570 74.0
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.5e-231 806.2 522 75.1
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 4.5e-228 794.7 521 74.5
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.5e-226 788.9 500 75.8
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.6e-225 786.2 507 73.0
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.1e-224 781.2 474 82.9
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.4e-221 772.3 530 70.9
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.5e-220 769.6 526 70.2
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.2e-219 765.8 530 70.0
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.3e-216 755.7 527 74.0
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 3.9e-216 755.0 525 68.6
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.7e-214 748.4 528 73.5
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 6.9e-213 744.2 503 71.6
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 4.6e-209 731.5 413 86.9
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.8e-208 729.6 528 72.7
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.4e-202 709.9 492 68.5
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.2e-202 708.8 527 71.2
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 4.7e-193 678.3 380 88.4
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 2.5e-186 656.0 502 63.9
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 4.7e-185 651.7 515 60.8
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 8.8e-184 647.5 420 80.2
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 5.9e-180 634.8 347 91.6
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.5e-175 620.2 345 88.4
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 2.4e-157 559.7 518 57.9
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 2.3e-152 543.1 356 77.2
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 5.8e-151 538.5 492 53.3
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 7.1e-149 531.6 297 86.5
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 2.0e-143 513.5 296 83.4
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 2.7e-140 503.1 275 90.9
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.2e-137 491.9 357 72.8
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 4.2e-133 479.2 511 49.3
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.2e-126 456.8 503 48.5
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 4.0e-120 436.0 286 78.3
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 1.3e-94 351.3 200 82.5
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 4.4e-82 309.7 410 40.5
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 7.7e-63 245.7 329 45.3
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.9e-62 243.8 366 42.9
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.9e-46 190.3 121 75.2
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 4.9e-41 173.3 93 87.1
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 4.3e-29 133.7 95 68.4
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 2.1e-28 131.3 79 78.5
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 7.8e-23 112.8 68 76.5
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 2.8e-20 104.4 82 62.2
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 4.3e-13 80.5 72 59.7
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 7.3e-13 79.7 125 42.4
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 8.1e-12 76.3 48 68.8
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.1e-08 65.9 35 82.9


User provided reference genes

Program Settings