Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 1.2e-245 852.8 466 100.0
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 3.9e-135 485.7 443 69.5
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.7e-98 364.0 219 91.3
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 1.3e-93 347.8 446 55.6
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 5.1e-34 149.8 570 32.6
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 5.1e-34 149.8 563 31.8
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.2e-30 138.7 552 29.9
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 2.6e-30 137.5 521 32.1
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 4.2e-28 130.2 565 31.3
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.2e-27 128.6 515 32.2
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 5.6e-25 119.8 561 31.9
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.3e-24 118.6 593 31.7
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 5.3e-23 113.2 554 30.0
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.6e-22 110.9 472 28.8
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 3.4e-22 110.5 440 30.5
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 4.5e-22 110.2 531 31.6
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.0e-21 109.0 427 31.4
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.1e-20 105.5 562 27.4
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.1e-20 105.5 555 28.3
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.4e-20 105.1 545 27.5
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.9e-20 104.8 535 30.5
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 3.2e-20 104.0 651 27.6
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 4.2e-20 103.6 357 31.7
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 4.2e-20 103.6 242 37.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 5.5e-20 103.2 593 26.8
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 9.3e-20 102.4 577 30.8
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.6e-19 101.7 627 28.4
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.3e-18 98.6 524 30.0
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.3e-18 97.8 519 30.3
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 2.3e-18 97.8 600 26.3
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.0e-18 97.4 466 30.3
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 2.5e-17 94.4 506 30.2
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 7.4e-17 92.8 413 28.3
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.6e-16 91.7 447 28.9
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.6e-16 91.7 372 30.4
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.8e-16 90.9 584 25.7
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.7e-16 90.5 399 28.1
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 4.8e-16 90.1 237 33.3
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 6.3e-16 89.7 344 30.5
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.4e-15 87.8 624 25.8
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 2.4e-15 87.8 252 32.5
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 3.1e-15 87.4 428 29.7
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 4.1e-15 87.0 245 33.5
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 5.3e-15 86.7 577 27.2
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 5.3e-15 86.7 361 29.6
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 9.0e-15 85.9 482 30.7
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.2e-14 85.5 264 34.8
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 4.5e-14 83.6 549 29.0
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 4.5e-14 83.6 440 28.0
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 5.9e-14 83.2 217 35.5
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 7.6e-14 82.8 584 27.7
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.0e-13 82.4 645 25.6
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 1.3e-13 82.0 187 40.6
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.7e-13 81.6 513 28.1
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 5.0e-13 80.1 575 27.3
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 5.0e-13 80.1 575 27.3
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 6.5e-13 79.7 240 35.8
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 6.5e-13 79.7 219 35.2
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 6.5e-13 79.7 301 29.2
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 4.2e-12 77.0 228 32.0
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 5.5e-12 76.6 326 28.8
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 5.5e-12 76.6 495 27.5
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 5.5e-12 76.6 290 30.3
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 5.5e-12 76.6 345 29.6
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.5e-12 76.6 431 30.4
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.2e-12 76.3 381 29.1
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 9.3e-12 75.9 480 28.3
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.2e-11 75.5 361 27.7
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.6e-11 75.1 561 26.7
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-11 74.7 357 26.6
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 3.6e-11 73.9 527 30.0
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 3.6e-11 73.9 361 30.5
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 4.6e-11 73.6 214 35.5
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 6.1e-11 73.2 500 26.6
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.3e-10 72.0 371 26.7
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 1.3e-10 72.0 209 35.4
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 3.0e-10 70.9 569 26.4
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 3.0e-10 70.9 209 33.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.9e-10 70.5 514 27.2
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.9e-10 70.5 268 29.5
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 5.1e-10 70.1 270 28.5
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 8.7e-10 69.3 326 30.4
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 8.7e-10 69.3 247 27.1
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 8.7e-10 69.3 253 29.2
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-09 68.9 562 26.3
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.1e-09 68.9 539 25.0
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.5e-09 68.6 198 32.3
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.9e-09 68.2 563 26.6
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.5e-09 67.8 625 26.2
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 4.3e-09 67.0 208 34.6
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.7e-09 66.6 578 26.0
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.3e-08 65.5 277 27.8
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 1.3e-08 65.5 413 27.4
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.6e-08 65.1 559 26.3
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.6e-08 65.1 632 23.7
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.6e-08 65.1 598 24.2
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.6e-08 65.1 189 33.3
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.2e-08 64.7 464 30.8
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.2e-08 64.7 341 27.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 2.8e-08 64.3 570 26.0
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.1e-07 62.4 401 27.2
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.8e-07 61.6 300 27.3
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.4e-07 61.2 371 27.0
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.4e-07 61.2 401 27.9
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.1e-07 60.8 237 30.8
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 4.1e-07 60.5 374 24.3
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 4.1e-07 60.5 152 36.8
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.1e-07 60.5 302 27.8
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 5.3e-07 60.1 284 29.2
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.3e-07 60.1 261 28.4
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.3e-07 60.1 447 28.0
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 6.9e-07 59.7 178 33.7
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.9e-07 59.7 99 39.4
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.9e-07 59.7 152 36.8
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 6.9e-07 59.7 428 27.1
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 9.0e-07 59.3 275 30.9
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 9.0e-07 59.3 514 25.7
SGA_v2.0_scaffold113G31729 Striga asiatica HOM05D026728 ORTHO05D004092 1.2e-06 58.9 330 27.0
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 1.5e-06 58.5 175 33.7
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 2.6e-06 57.8 211 29.9
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 4.5e-06 57.0 142 33.1
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.5e-06 57.0 232 33.6
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 4.5e-06 57.0 130 34.6


User provided reference genes

Program Settings