Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 0.0e+00 2365.5 1188 100.0
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 0.0e+00 2113.2 1245 87.8
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 0.0e+00 1923.7 1220 83.1
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 0.0e+00 1492.2 1099 73.0
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 2.0e-308 1062.8 1274 50.4
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 2.2e-291 1006.1 1244 49.6
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 5.8e-284 981.5 1281 47.2
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 4.0e-277 958.7 1275 45.9
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 2.1e-270 936.4 1243 47.1
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 4.8e-270 935.3 1288 45.5
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 5.8e-268 928.3 1253 46.4
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 5.8e-268 928.3 1281 45.3
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 1.3e-267 927.2 1270 46.2
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 1.3e-259 900.6 1320 43.3
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 2.0e-244 850.1 927 51.3
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 1.0e-243 847.8 1285 43.0
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 9.7e-239 831.2 823 53.7
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.1e-234 817.8 1286 41.5
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 2.8e-230 803.1 1242 41.8
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 7.2e-226 788.5 1191 42.9
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 1.8e-224 783.9 1230 41.1
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 6.7e-224 781.9 1327 39.8
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 6.7e-224 781.9 1263 40.9
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 2.6e-220 770.0 936 48.9
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 1.3e-219 767.7 1278 38.4
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 4.2e-218 762.7 1213 41.0
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 2.1e-217 760.4 1299 40.0
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 1.8e-216 757.3 1311 38.9
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 5.4e-213 745.7 1280 40.4
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 1.6e-212 744.2 893 47.9
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 5.5e-210 735.7 1254 40.4
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 1.8e-208 730.7 1227 39.4
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 8.3e-206 721.8 830 47.6
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 8.9e-200 701.8 1037 42.9
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 2.7e-196 690.3 1159 40.3
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 4.3e-194 682.9 1152 40.7
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 7.3e-194 682.2 926 43.8
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 4.0e-192 676.4 1232 38.1
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 5.2e-192 676.0 1227 37.7
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 8.9e-192 675.2 1316 35.6
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 4.6e-188 662.9 1233 37.5
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 4.6e-188 662.9 1239 37.0
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 3.9e-187 659.8 832 46.2
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 8.6e-187 658.7 841 45.8
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 2.5e-186 657.1 1225 37.6
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 3.3e-186 656.8 1087 40.5
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 2.8e-185 653.7 1249 37.3
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 6.2e-185 652.5 706 52.4
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 8.1e-185 652.1 831 45.5
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 1.1e-184 651.7 1020 43.0
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 4.1e-181 639.8 831 45.1
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 5.1e-179 632.9 1087 39.9
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 7.3e-178 629.0 1230 36.5
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 1.3e-174 618.2 1120 37.8
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 6.0e-172 609.4 932 40.8
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 7.8e-172 609.0 1182 36.0
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 4.7e-169 599.7 1253 35.8
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 6.2e-169 599.4 1220 35.2
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 3.2e-165 587.0 1145 36.6
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 1.0e-155 555.4 1241 33.4
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 2.5e-154 550.8 875 41.3
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 4.3e-146 523.5 640 47.3
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 8.7e-139 499.2 1209 31.7
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.1e-130 472.2 869 34.3
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 3.3e-130 470.7 832 37.0
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 8.2e-129 466.1 852 39.0
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 6.9e-128 463.0 871 35.8
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 7.7e-127 459.5 1092 30.3
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 3.8e-126 457.2 1229 31.7
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 1.6e-124 451.8 448 55.6
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 2.5e-122 444.5 1239 31.2
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.3e-113 415.6 755 34.4
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 5.0e-110 403.7 445 51.0
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 1.2e-98 365.9 654 35.0
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 2.4e-96 358.2 501 43.5
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 2.2e-94 351.7 751 36.0
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 7.8e-71 273.5 644 33.9
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 4.6e-63 247.7 186 66.7
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 1.9e-53 215.7 364 39.0
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 1.9e-48 199.1 749 25.2
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 2.5e-45 188.7 653 29.4
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 7.6e-34 150.6 608 27.3
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 4.3e-29 134.8 548 27.2
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 5.6e-29 134.4 101 62.4
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 8.1e-28 130.6 411 27.0
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.1e-27 130.2 114 57.9
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.3e-25 123.2 90 72.2
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 2.2e-25 122.5 634 23.2
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 6.5e-25 120.9 88 69.3
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 6.5e-25 120.9 396 30.6
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 4.2e-24 118.2 88 68.2
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 3.0e-22 112.1 89 66.3
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 7.2e-16 90.9 344 27.6
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 2.1e-15 89.4 60 66.7
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 6.1e-15 87.8 191 35.6
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 7.9e-15 87.4 159 40.3
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 7.9e-15 87.4 118 44.1
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 8.7e-14 84.0 159 39.6
Sed0021710 Sechium edule HOM05D007125 ORTHO05D008766 1.1e-11 77.0 69 58.0
PRCOL_00001248 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.8e-11 76.3 211 29.9
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 1.8e-11 76.3 88 46.6
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 3.1e-11 75.5 273 31.1
MCO11G281 Micromonas commoda HOM05D015011 ORTHO05D017325 2.0e-10 72.8 217 28.1
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 4.2e-08 65.1 151 33.1
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 1.2e-07 63.5 119 33.6
MCO16G645 Micromonas commoda HOM05D014975 ORTHO05D016505 1.6e-07 63.2 234 28.6
Hma1.2p1_0763F.1_g214650 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 4.6e-07 61.6 144 33.3
AagrBONN_evm.TU.Sc2ySwM_362.2826 Anthoceros agrestis HOM05D014975 ORTHO05D016505 1.8e-06 59.7 196 26.5


User provided reference genes

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