Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1669.1 858 100.0
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1622.4 858 97.1
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1581.2 858 94.9
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1475.3 858 89.0
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1471.4 922 83.9
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1312.4 860 79.2
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1309.7 859 78.3
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1300.0 863 76.9
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1296.6 858 76.7
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1282.3 860 76.7
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1278.1 867 76.1
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1274.2 871 75.2
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1273.1 859 76.4
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1271.9 857 76.1
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1270.8 859 76.1
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1268.4 871 75.0
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1268.4 885 74.9
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1265.4 871 75.5
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1263.8 873 75.0
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1263.8 863 75.0
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1263.4 908 73.3
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1262.3 860 75.9
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1262.3 880 75.2
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1260.4 863 75.3
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1260.4 873 75.4
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1260.0 859 75.3
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1257.7 858 75.2
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1255.0 879 74.5
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1252.3 888 73.0
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1250.7 856 73.9
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1245.3 888 73.2
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 850 74.4
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1235.3 863 74.4
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1233.0 853 73.5
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1230.3 863 74.0
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1225.7 847 74.4
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1224.9 875 72.6
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1224.2 863 71.1
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1223.8 858 74.1
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1223.4 865 73.3
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1222.6 853 73.2
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1220.7 903 71.0
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1220.3 914 70.4
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1219.9 929 69.6
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1219.1 865 73.2
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1216.8 862 73.0
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1213.0 902 70.1
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 848 73.7
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 903 70.8
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 893 71.2
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1205.7 888 71.8
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1204.1 867 71.4
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 872 72.2
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1203.3 867 72.5
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1203.0 902 70.2
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1202.6 904 70.0
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1202.2 936 68.3
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1201.4 909 70.0
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1201.4 892 70.6
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1201.0 858 73.0
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1201.0 910 69.6
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1200.7 886 70.7
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 888 71.7
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1198.0 892 69.7
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1196.0 903 70.7
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1195.6 867 71.9
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1195.6 879 71.2
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1194.9 903 70.5
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1194.9 903 70.5
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 897 70.1
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1189.9 822 74.5
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 873 72.2
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1183.7 870 71.0
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1182.5 880 69.8
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1181.4 899 70.0
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1181.0 896 70.6
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 894 69.8
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1175.6 934 66.8
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1174.8 897 69.8
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1174.8 866 70.7
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1174.5 879 70.8
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1174.1 880 69.2
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1171.8 899 69.1
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1171.0 915 68.3
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1170.2 868 68.4
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1167.9 881 69.6
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1167.9 868 70.0
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1166.0 924 66.2
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1164.1 917 67.6
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1162.9 837 72.5
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 869 70.2
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1161.0 869 70.5
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1158.7 813 73.3
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1157.1 853 70.5
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1147.9 943 66.0
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1145.2 853 71.3
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1133.6 852 67.4
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1130.9 895 68.0
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1127.5 902 65.9
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1126.7 907 67.1
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1123.2 824 72.1
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1122.8 1004 61.2
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1122.1 959 65.0
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 898 66.1
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1119.4 858 67.4
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1110.9 851 68.6
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1105.1 839 68.2
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1090.9 854 64.9
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 8.8e-311 1070.1 748 71.3
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 4.5e-310 1067.8 820 66.8
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 7.9e-299 1030.4 839 65.1
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 1.6e-288 996.1 906 61.8
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.5e-281 973.0 719 69.5
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 1.3e-277 959.9 722 71.2
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 2.5e-276 955.7 715 69.1
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 7.9e-275 950.7 840 58.2
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 1.8e-274 949.5 698 72.2
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 3.0e-274 948.7 865 61.8
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.2e-270 936.8 962 57.8
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 1.0e-269 933.7 580 78.6
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 3.0e-266 922.2 873 56.7
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 7.7e-262 907.5 505 85.3
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 8.2e-256 887.5 847 56.8
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.3e-242 842.8 688 65.7
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.2e-190 671.0 662 57.6
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 7.1e-183 645.2 527 68.3
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.2e-175 619.8 384 77.3
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 6.0e-174 615.5 369 78.6
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.7e-168 597.4 352 81.5
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.5e-167 593.6 341 81.2
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.7e-163 579.7 365 75.6
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.0e-157 560.1 543 60.0
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.9e-157 559.7 452 64.8
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.6e-145 520.4 692 45.7
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 2.2e-136 490.7 844 38.5
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 4.4e-132 476.5 988 35.1
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 6.8e-125 452.6 300 74.0
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.2e-121 441.8 495 55.4
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 6.6e-112 409.5 297 69.0
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.8e-109 401.4 455 56.5
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 1.5e-100 371.7 1038 30.3
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 4.3e-95 353.6 607 39.7
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 9.5e-87 325.9 344 60.8
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 6.6e-72 276.6 165 80.0
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 2.5e-55 221.5 330 42.7
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 4.3e-47 194.1 143 80.4
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.4e-42 179.1 104 81.7
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 3.4e-36 157.9 107 67.3
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.9e-35 154.8 107 72.9
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 2.1e-33 148.7 87 80.5
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 3.6e-25 121.3 86 72.1
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 3.3e-23 114.8 77 72.7
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.7e-19 102.4 61 77.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-18 99.4 94 58.5
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 1.6e-17 95.9 94 57.4
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 8.0e-17 93.6 95 57.9
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.4e-13 82.8 57 68.4
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.7e-12 78.6 55 69.1
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 1.7e-11 75.9 41 82.9
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 2.2e-11 75.5 58 63.8
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.6e-09 69.3 40 90.0
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 2.7e-09 68.6 52 67.3
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 2.7e-09 68.6 65 50.8
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 4.0e-08 64.7 47 68.1


User provided reference genes

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