Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 2.3e-199 698.7 363 100.0
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 3.9e-183 644.8 366 92.6
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 8.7e-183 643.7 363 93.1
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 9.1e-148 527.3 336 83.0
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 2.5e-121 439.5 381 66.1
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 3.3e-121 439.1 391 63.9
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 1.8e-119 433.3 378 65.3
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 1.5e-118 430.3 380 65.3
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 2.6e-118 429.5 382 64.7
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 5.8e-118 428.3 388 64.4
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 3.7e-117 425.6 372 64.8
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 3.7e-117 425.6 381 63.8
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 1.1e-116 424.1 387 64.3
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 3.2e-116 422.5 381 63.5
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 4.1e-116 422.2 374 64.2
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 7.1e-116 421.4 369 64.8
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 9.2e-116 421.0 376 64.1
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 1.6e-115 420.2 374 63.9
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 1.6e-115 420.2 370 64.9
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 2.7e-115 419.5 298 74.5
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 3.5e-115 419.1 372 65.1
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 3.5e-115 419.1 384 62.5
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 3.5e-115 419.1 368 64.1
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 4.6e-115 418.7 384 62.8
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 6.0e-115 418.3 381 62.5
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 6.0e-115 418.3 369 64.5
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 7.8e-115 417.9 370 64.1
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.8e-115 417.9 370 64.1
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 2.3e-114 416.4 336 69.0
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 3.0e-114 416.0 315 71.1
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.0e-114 416.0 364 65.4
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 3.0e-114 416.0 381 62.7
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 3.9e-114 415.6 311 72.3
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 3.9e-114 415.6 384 62.5
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 6.6e-114 414.8 378 62.7
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 6.6e-114 414.8 324 71.9
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 8.6e-114 414.5 369 63.7
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 1.1e-113 414.1 368 64.7
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.1e-113 414.1 370 63.8
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 1.1e-113 414.1 364 64.3
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 1.1e-113 414.1 365 64.4
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 1.9e-113 413.3 377 62.9
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 1.9e-113 413.3 377 62.9
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 1.9e-113 413.3 369 64.0
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 1.9e-113 413.3 375 64.3
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 2.5e-113 412.9 387 61.5
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 3.3e-113 412.5 272 80.1
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.3e-113 412.5 370 63.5
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 4.3e-113 412.1 294 75.5
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 5.6e-113 411.8 305 73.8
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 5.6e-113 411.8 362 64.4
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 7.3e-113 411.4 366 64.5
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 1.2e-112 410.6 322 71.1
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 1.6e-112 410.2 272 79.0
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 2.1e-112 409.8 382 63.1
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 2.1e-112 409.8 369 63.7
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 2.1e-112 409.8 347 66.0
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 2.8e-112 409.5 274 77.0
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 3.6e-112 409.1 268 79.9
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 1.1e-111 407.5 389 60.7
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 1.1e-111 407.5 355 66.2
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.4e-111 407.1 367 63.8
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 1.4e-111 407.1 277 78.0
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 1.8e-111 406.8 371 61.2
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 2.4e-111 406.4 268 79.1
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 1.2e-110 404.1 358 64.2
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 2.0e-110 403.3 400 60.0
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 4.4e-110 402.1 323 68.7
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.7e-109 400.2 270 77.4
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 2.2e-109 399.8 268 77.2
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 3.8e-109 399.1 278 77.0
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 8.4e-109 397.9 266 78.2
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 9.2e-108 394.4 260 79.2
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 2.7e-107 392.9 277 74.7
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 4.6e-107 392.1 277 74.7
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 7.8e-107 391.3 319 67.7
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 1.7e-106 390.2 423 55.8
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 2.8e-104 382.9 248 80.6
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 2.8e-104 382.9 389 58.1
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 3.1e-103 379.4 306 67.3
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 7.6e-102 374.8 269 72.9
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 2.2e-101 373.2 269 72.5
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 3.8e-101 372.5 299 66.2
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 1.9e-100 370.2 274 69.3
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 5.4e-100 368.6 334 62.9
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 1.6e-99 367.1 280 70.7
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 9.6e-97 357.8 276 71.0
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 1.3e-96 357.5 305 63.0
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 2.4e-95 353.2 408 53.4
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 1.5e-94 350.5 413 52.3
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 5.8e-94 348.6 273 66.3
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 7.6e-94 348.2 279 64.9
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 4.9e-93 345.5 231 77.9
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 8.4e-93 344.7 295 64.7
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 2.7e-91 339.7 326 61.3
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 7.9e-91 338.2 393 54.5
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 1.0e-90 337.8 268 64.2
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 1.8e-90 337.0 324 58.6
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.5e-89 333.2 425 50.1
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 6.9e-87 325.1 360 55.8
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.4e-84 316.6 208 79.8
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 7.9e-83 311.6 272 66.2
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 1.0e-82 311.2 344 57.0
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 3.9e-82 309.3 240 70.8
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 3.8e-77 292.7 296 59.5
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 1.0e-74 284.6 274 56.2
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 6.7e-74 282.0 388 49.7
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 1.3e-72 277.7 263 57.4
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 8.2e-72 275.0 422 46.2
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 7.2e-68 261.9 260 56.5
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 9.4e-68 261.5 179 78.2
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 4.3e-65 252.7 290 49.7
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 4.1e-63 246.1 188 67.0
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.2e-61 240.4 266 51.5
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 2.5e-60 236.9 253 56.1
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 1.4e-58 231.1 258 54.7
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 2.6e-57 226.9 158 75.3
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 6.7e-50 202.2 134 76.9
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 1.5e-49 201.1 134 79.9
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 5.7e-49 199.1 133 75.9
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 2.8e-48 196.8 119 84.0
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 4.2e-36 156.4 251 36.7
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 3.0e-34 150.2 108 69.4
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-23 113.6 187 34.8
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 2.7e-22 110.5 177 39.5
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 3.5e-22 110.2 82 73.2
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 7.3e-20 102.4 87 65.5
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 2.0e-14 84.3 60 73.3
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 6.2e-11 72.8 38 94.7
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 6.8e-10 69.3 271 24.7
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 1.2e-09 68.6 59 64.4
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 6.4e-08 62.8 51 58.8
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 6.4e-08 62.8 36 83.3


User provided reference genes

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