Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 0.0e+00 2277.7 1444 100.0
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 0.0e+00 2157.1 1448 93.0
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 0.0e+00 1922.1 1508 80.9
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 0.0e+00 1669.4 1454 74.8
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1118.2 1471 53.2
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1105.5 1507 52.9
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1100.5 1496 52.6
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1094.7 1475 52.1
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1078.9 1479 53.5
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1077.4 1542 51.7
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 7.5e-310 1067.8 1474 53.3
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 1.3e-309 1067.0 1426 54.0
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 4.1e-308 1062.0 1467 50.9
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 2.7e-307 1059.3 1471 53.4
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 8.5e-306 1054.3 1471 52.8
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 7.2e-305 1051.2 1521 49.9
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 1.2e-304 1050.4 1468 51.6
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 2.1e-304 1049.7 1476 50.5
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 4.7e-304 1048.5 1470 52.0
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.0e-303 1047.3 1464 54.5
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 1.2e-302 1043.9 1462 52.7
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 1.1e-300 1037.3 1459 50.8
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.6e-299 1033.5 1469 51.8
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.3e-297 1025.8 1469 54.7
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 7.3e-297 1024.6 1495 51.6
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 2.1e-296 1023.1 1484 52.2
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 6.1e-296 1021.5 1475 54.0
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 1.4e-295 1020.4 1491 49.5
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 5.2e-295 1018.5 1473 52.3
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.7e-293 1012.3 1513 52.8
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 3.7e-293 1012.3 1273 54.8
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 2.0e-291 1006.5 1515 49.5
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.5e-289 1000.3 1518 48.2
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 2.5e-289 999.6 1534 48.7
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 3.6e-288 995.7 1519 50.0
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 3.1e-287 992.6 1527 50.1
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 9.2e-284 981.1 1523 50.8
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 2.3e-279 966.5 1509 48.1
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 8.3e-277 958.0 1581 46.4
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 1.1e-273 947.6 1482 47.2
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 2.5e-273 946.4 1555 47.1
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 2.5e-273 946.4 1521 48.0
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 4.7e-272 942.2 1551 47.1
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 2.9e-269 932.9 1504 50.5
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.4e-268 930.6 1517 47.0
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.9e-266 922.5 1474 46.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 2.1e-264 916.8 1492 49.9
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.4e-263 913.3 1491 46.9
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.6e-262 909.8 1538 45.4
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 2.2e-261 906.7 1454 50.3
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 4.5e-254 882.5 1482 46.0
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 3.8e-253 879.4 1508 45.6
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 4.3e-249 865.9 1445 47.4
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 9.0e-247 858.2 1499 47.9
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 2.0e-246 857.1 1495 46.1
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 9.3e-244 848.2 1554 45.8
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 6.0e-243 845.5 1457 45.2
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 6.0e-243 845.5 1481 45.0
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.3e-242 844.3 1494 45.1
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 3.1e-239 833.2 1683 41.4
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.9e-237 826.6 1313 46.9
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 5.5e-236 822.4 1228 51.1
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 2.7e-235 820.1 1488 47.3
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 1.5e-233 814.3 1489 47.4
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 6.3e-232 808.9 734 67.0
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 6.3e-232 808.9 1482 47.9
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 1.3e-229 801.2 1474 44.4
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 5.0e-229 799.3 1487 43.2
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 2.1e-227 793.9 1500 44.1
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 3.3e-225 786.6 1377 45.2
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 3.7e-224 783.1 1554 43.6
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 2.6e-222 776.9 1484 46.4
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.0e-221 775.0 1497 44.0
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 7.4e-217 758.8 1529 44.8
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 1.7e-213 747.7 1490 45.8
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 7.2e-212 742.3 1502 41.9
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 1.1e-209 734.9 1497 46.8
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 2.8e-208 730.3 1473 43.9
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 7.7e-206 722.2 1492 45.4
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 1.4e-202 711.4 1314 43.2
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 1.5e-201 708.0 1506 42.7
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 8.2e-200 702.2 1464 43.0
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 3.1e-199 700.3 1474 44.6
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 2.0e-198 697.6 1465 43.2
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 2.5e-196 690.6 1455 45.0
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 5.5e-196 689.5 1455 44.7
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 5.5e-196 689.5 1455 44.7
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.7e-192 677.9 1442 42.5
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 7.2e-188 662.5 1501 40.3
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 9.5e-188 662.1 1461 39.8
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 2.6e-185 654.1 1488 43.8
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.3e-184 651.7 1474 40.0
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 2.7e-182 644.0 1475 40.3
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.3e-181 641.0 1080 46.1
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 3.9e-173 613.6 1417 42.6
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 2.0e-161 574.7 1322 43.2
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 7.8e-158 562.8 596 62.4
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 5.1e-157 560.1 1549 35.8
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.7e-149 535.0 1385 35.4
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 1.1e-148 532.3 1226 35.7
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 6.0e-142 510.0 1285 37.4
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.3e-139 502.3 1324 37.8
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 2.8e-131 474.6 1496 39.0
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 1.5e-129 468.8 845 44.7
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.2e-126 459.1 574 51.9
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.9e-111 408.7 1348 31.7
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.6e-86 325.9 1485 34.3
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.3e-72 279.6 833 36.3
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 8.9e-69 266.9 439 48.7
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.1e-61 241.9 1511 25.2
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 3.9e-56 224.9 280 41.1
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.1e-53 216.9 834 30.5
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 9.8e-52 210.3 1432 24.4
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.3e-51 209.9 1474 26.0
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 8.3e-51 207.2 1000 25.5
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 4.3e-47 194.9 209 53.6
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 3.7e-43 181.8 424 40.8
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.4e-34 152.5 174 48.9
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 9.2e-34 150.6 359 36.5
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 3.5e-33 148.7 92 73.9
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 2.3e-32 146.0 205 44.9
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 6.6e-32 144.4 368 35.9
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 1.1e-31 143.7 162 56.8
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 1.1e-29 137.1 99 72.7
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.4e-27 127.5 293 50.5
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 9.6e-23 114.0 64 85.9
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 8.1e-22 110.9 120 47.5
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 8.4e-19 100.9 294 37.1
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.1e-18 100.5 69 71.0
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 4.2e-18 98.6 65 67.7
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 7.9e-17 94.4 364 32.7
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 6.7e-16 91.3 61 65.6
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 2.4e-13 82.8 76 53.9
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.4e-13 82.8 50 74.0
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 5.3e-13 81.6 225 33.8
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 9.0e-13 80.9 94 51.1
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.0e-11 77.4 132 43.9
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 4.9e-11 75.1 326 26.7
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 8.4e-11 74.3 50 62.0
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 1.1e-10 73.9 306 23.5
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 1.4e-10 73.6 91 50.5
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.6e-09 70.1 78 43.6
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 6.0e-09 68.2 40 72.5
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.5e-07 63.5 94 42.6
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 5.7e-07 61.6 57 52.6
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 5.7e-07 61.6 92 39.1
RcHm_v2.0_Chr7g0218771 Rosa chinensis HOM05D004594 ORTHO05D005225 2.1e-06 59.7 89 39.3


User provided reference genes

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