Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 3.1e-242 841.3 394 100.0
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.5e-207 726.1 360 95.8
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 1.6e-198 696.0 360 90.0
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 7.5e-196 687.2 375 86.7
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 2.4e-194 682.2 360 88.9
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 9.8e-180 633.6 370 83.2
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 4.7e-174 614.8 355 80.3
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 6.2e-174 614.4 354 80.2
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 8.1e-174 614.0 357 80.1
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 9.8e-172 607.1 354 79.7
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 2.2e-171 605.9 360 76.9
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.9e-170 602.8 355 79.2
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 2.4e-170 602.4 355 78.3
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 5.4e-170 601.3 355 79.2
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 9.2e-170 600.5 355 78.0
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.2e-169 600.1 355 78.9
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 1.6e-169 599.7 355 78.9
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 3.5e-169 598.6 357 78.7
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 4.6e-169 598.2 355 78.3
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 4.6e-169 598.2 358 77.9
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 1.7e-168 596.3 358 76.8
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 6.6e-168 594.3 355 77.7
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 6.6e-168 594.3 356 77.0
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 1.9e-167 592.8 355 76.6
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 5.6e-167 591.3 355 76.1
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 9.5e-167 590.5 355 76.6
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 1.6e-166 589.7 355 76.9
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 1.6e-166 589.7 354 76.8
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.6e-166 589.7 355 77.7
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 2.8e-166 589.0 355 77.2
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 4.7e-166 588.2 355 76.9
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 8.1e-166 587.4 366 75.7
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 8.1e-166 587.4 355 76.6
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 1.1e-165 587.0 392 71.4
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 4.0e-165 585.1 358 75.7
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 5.2e-165 584.7 355 75.8
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 5.2e-165 584.7 355 74.9
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 1.2e-164 583.6 349 76.8
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 1.5e-164 583.2 356 75.6
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 1.5e-164 583.2 353 75.9
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 2.0e-164 582.8 355 75.8
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 2.0e-164 582.8 356 75.6
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 4.4e-164 581.6 355 74.9
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 9.9e-164 580.5 355 75.2
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 2.2e-163 579.3 356 75.8
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 2.2e-163 579.3 353 74.2
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.9e-163 578.9 355 73.2
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 2.9e-163 578.9 355 75.5
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.4e-162 575.9 355 73.8
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 5.4e-162 574.7 353 74.8
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 7.1e-162 574.3 355 74.1
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 7.1e-162 574.3 355 74.9
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 9.2e-162 573.9 385 71.4
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 1.2e-161 573.5 360 75.6
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 4.6e-161 571.6 355 73.8
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 4.6e-161 571.6 355 74.4
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 4.6e-161 571.6 355 74.4
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 6.0e-161 571.2 354 74.9
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 1.3e-160 570.1 354 75.1
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 3.9e-160 568.5 355 74.1
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 3.9e-160 568.5 356 73.9
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 1.1e-159 567.0 355 72.4
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 1.5e-159 566.6 355 73.8
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 2.5e-159 565.8 355 73.5
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 2.5e-159 565.8 361 73.4
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 3.3e-159 565.5 358 74.9
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 5.6e-159 564.7 353 73.7
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 1.2e-158 563.5 358 74.0
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.2e-158 563.5 356 72.8
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 1.2e-158 563.5 356 71.9
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 1.6e-158 563.1 357 72.8
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 2.8e-158 562.4 357 73.7
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 3.6e-158 562.0 358 74.3
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 4.7e-158 561.6 354 73.4
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 2.4e-157 559.3 358 74.0
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 5.2e-157 558.1 358 72.6
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 1.5e-156 556.6 358 73.7
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 2.6e-156 555.8 359 73.3
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 3.4e-156 555.4 358 73.5
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 9.9e-156 553.9 360 73.6
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 2.9e-155 552.4 356 71.3
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 3.8e-155 552.0 352 71.9
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 8.4e-155 550.8 360 73.1
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 8.4e-155 550.8 360 73.1
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.2e-154 548.9 355 71.0
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 4.2e-154 548.5 356 71.3
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 7.1e-154 547.7 360 72.2
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 2.7e-153 545.8 357 71.4
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 4.6e-153 545.0 397 64.5
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 1.0e-152 543.9 354 72.3
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 8.7e-152 540.8 358 73.2
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 3.3e-151 538.9 349 69.6
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.3e-150 537.0 340 72.6
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 8.1e-150 534.3 359 71.3
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.1e-149 532.3 362 68.0
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 7.6e-148 527.7 353 70.3
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.2e-147 526.2 367 66.5
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 3.9e-144 515.4 359 67.1
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 5.6e-143 511.5 353 66.6
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.2e-140 503.8 303 77.6
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.8e-136 490.0 306 72.9
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 4.3e-135 485.3 359 67.4
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 1.3e-126 457.2 264 81.1
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 2.2e-126 456.4 265 80.0
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.3e-123 447.2 266 76.7
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 1.1e-111 407.5 357 54.3
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.5e-108 397.1 367 51.0
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 3.2e-106 389.4 367 51.0
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.6e-105 387.1 374 51.3
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.1e-101 374.4 319 58.9
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.9e-98 363.6 208 81.7
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 4.7e-97 359.0 209 80.9
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 5.3e-93 345.5 395 44.1
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.4e-85 320.9 243 61.7
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 9.8e-79 298.1 171 80.7
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 9.5e-74 281.6 185 65.4
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 4.3e-66 256.1 160 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 6.2e-57 225.7 165 63.6
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 5.8e-55 219.2 126 81.0
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 6.2e-49 199.1 129 68.2
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 1.8e-48 197.6 114 79.8
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 2.1e-44 184.1 116 74.1
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 5.3e-40 169.5 129 63.6
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 2.0e-31 141.0 429 27.7
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 4.3e-26 123.2 86 68.6
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.3e-25 121.7 460 25.4
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 3.8e-22 110.2 348 26.7
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 3.3e-18 97.1 327 28.7
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 6.5e-14 82.8 54 75.9
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 3.2e-13 80.5 80 58.8
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.3e-11 75.1 240 29.2
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.5e-10 70.9 102 37.3
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 8.2e-09 65.9 61 54.1
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 8.2e-09 65.9 61 54.1
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 5.9e-07 59.7 74 40.5
MCO03G031 Micromonas commoda HOM05D007020 ORTHO05D008102 5.0e-06 56.6 199 24.6
MD14G1151500 Malus domestica HOM05D005705 ORTHO05D007152 6.5e-06 56.2 249 24.1


User provided reference genes

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