Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002357.2 Cucumis melo HOM05D006654 ORTHO05D008201 5.7e-144 514.2 260 100.0
ClCG03G003720 Citrullus lanatus HOM05D006654 ORTHO05D008201 1.6e-114 416.4 243 88.9
CsaV3_1G009610 Cucumis sativus L. HOM05D006654 ORTHO05D008201 1.6e-114 416.4 243 88.9
Haze_07229 Corylus avellana HOM05D006654 ORTHO05D008201 1.3e-111 406.8 243 85.2
CSS0035351 Camellia sinensis var. sinensis HOM05D006654 ORTHO05D008201 3.8e-111 405.2 243 85.2
Hma1.2p1_0014F.1_g009560 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 1.4e-110 403.3 243 85.2
Gorai.003G121200 Gossypium raimondii HOM05D006654 ORTHO05D008201 1.9e-110 402.9 243 85.2
Thecc.03G127500 Theobroma cacao HOM05D006654 ORTHO05D008201 1.9e-110 402.9 243 85.2
Rhsim12G0173900 Rhododendron simsii HOM05D006654 ORTHO05D008201 2.4e-110 402.5 243 84.8
CiPaw.12G042200 Carya illinoinensis HOM05D006654 ORTHO05D008201 3.2e-110 402.1 243 85.2
Actinidia08864 Actinidia chinensis HOM05D006654 ORTHO05D008201 7.1e-110 401.0 243 84.0
Manes.14G052100 Manihot esculenta HOM05D006654 ORTHO05D008201 9.2e-110 400.6 243 84.4
Manes.06G118600 Manihot esculenta HOM05D006654 ORTHO05D008201 1.2e-109 400.2 243 84.0
TWI23G1026 Tripterygium wilfordii HOM05D006654 ORTHO05D008201 1.2e-109 400.2 243 84.0
QL10p003811 Quercus lobata HOM05D006654 ORTHO05D008201 2.1e-109 399.4 243 84.4
GSVIVG01008527001 Vitis vinifera HOM05D006654 ORTHO05D008201 7.8e-109 397.5 243 83.5
TAR371G0211 Trochodendron aralioides HOM05D006654 ORTHO05D008201 1.3e-108 396.7 243 83.1
Lsat_1_v5_gn_4_76920 Lactuca sativa HOM05D006654 ORTHO05D008201 2.3e-108 396.0 243 84.0
EL10As4g23406 Beta vulgaris HOM05D006654 ORTHO05D008201 3.0e-108 395.6 243 82.3
Potri.012G096500 Populus trichocarpa HOM05D006654 ORTHO05D008201 5.1e-108 394.8 243 82.7
AUR62029635 Chenopodium quinoa HOM05D006654 ORTHO05D008201 1.5e-107 393.3 243 81.5
arahy.Tifrunner.gnm1.ann1.S79YT6 Arachis hypogaea HOM05D006654 ORTHO05D008201 1.9e-107 392.9 243 81.9
ECA232G0809 Erigeron canadensis HOM05D006654 ORTHO05D008201 2.5e-107 392.5 243 82.3
MBI07_g34629_MAGBIO Magnolia biondii HOM05D006654 ORTHO05D008201 2.5e-107 392.5 243 83.5
MD02G1316100 Malus domestica HOM05D006654 ORTHO05D008201 2.5e-107 392.5 243 83.5
Sc10g0010430 Simmondsia chinensis HOM05D006654 ORTHO05D008201 4.3e-107 391.7 243 81.5
MD07G1005800 Malus domestica HOM05D006654 ORTHO05D008201 5.6e-107 391.3 243 83.1
Prupe.4G287600 Prunus persica HOM05D006654 ORTHO05D008201 5.6e-107 391.3 243 82.7
Aqoxy5G03402 Aquilegia oxysepala HOM05D006654 ORTHO05D008201 7.3e-107 391.0 243 82.3
vmacro16672 Vaccinium macrocarpon HOM05D006654 ORTHO05D008201 1.2e-106 390.2 249 79.5
HanXRQChr16g0497681 Helianthus annuus HOM05D006654 ORTHO05D008201 2.1e-106 389.4 244 82.4
Oeu023486.1 Olea europaea HOM05D006654 ORTHO05D008201 2.8e-106 389.0 243 81.1
VMungo0720G2310 Vigna mungo HOM05D006654 ORTHO05D008201 3.6e-106 388.7 252 79.0
RcHm_v2.0_Chr1g0314831 Rosa chinensis HOM05D006654 ORTHO05D008201 8.1e-106 387.5 243 81.9
FAN03G1885 Fragaria x ananassa HOM05D006654 ORTHO05D008201 1.1e-105 387.1 243 81.5
Carub.0008s2414 Capsella rubella HOM05D006654 ORTHO05D008201 1.4e-105 386.7 243 81.1
FAN01G0962 Fragaria x ananassa HOM05D006654 ORTHO05D008201 3.1e-105 385.6 243 81.1
FAN06G4528 Fragaria x ananassa HOM05D006654 ORTHO05D008201 3.1e-105 385.6 243 81.1
AL8G40500 Arabidopsis lyrata HOM05D006654 ORTHO05D008201 4.0e-105 385.2 243 80.7
Cpa.g.sc13.133 Carica papaya HOM05D006654 ORTHO05D008201 4.0e-105 385.2 236 82.6
Nn4g22349 Nelumbo nucifera HOM05D006654 ORTHO05D008201 4.0e-105 385.2 243 81.1
PGR083G1205 Punica granatum HOM05D006654 ORTHO05D008201 4.0e-105 385.2 243 81.5
THA.LOC104818189 Tarenaya hassleriana HOM05D006654 ORTHO05D008201 4.0e-105 385.2 243 80.2
SGA_v2.0_scaffold161G37776 Striga asiatica HOM05D006654 ORTHO05D008201 5.2e-105 384.8 243 80.7
Aa31LG1G18600 Aethionema arabicum HOM05D006654 ORTHO05D008201 6.9e-105 384.4 243 79.8
AT5G63440 Arabidopsis thaliana HOM05D006654 ORTHO05D008201 6.9e-105 384.4 243 80.7
CANSAT80G1342 Cannabis sativa HOM05D006654 ORTHO05D008201 8.9e-105 384.0 243 81.5
Eucgr.F01379 Eucalyptus grandis HOM05D006654 ORTHO05D008201 8.9e-105 384.0 243 81.1
FvH4_7g00630 Fragaria vesca HOM05D006654 ORTHO05D008201 8.9e-105 384.0 243 80.7
Sp2g26520 Schrenkiella parvula HOM05D006654 ORTHO05D008201 8.9e-105 384.0 243 79.8
Cc04_g10050 Coffea canephora HOM05D006654 ORTHO05D008201 1.2e-104 383.6 243 80.7
Migut.I00498 Erythranthe guttata HOM05D006654 ORTHO05D008201 1.2e-104 383.6 243 80.2
FAN10G2487 Fragaria x ananassa HOM05D006654 ORTHO05D008201 1.2e-104 383.6 243 80.7
FAN01G2458 Fragaria x ananassa HOM05D006654 ORTHO05D008201 1.5e-104 383.3 243 80.2
Os07g0295200 Oryza sativa ssp. japonica HOM05D006654 ORTHO05D008201 1.5e-104 383.3 243 79.8
Potri.015G094300 Populus trichocarpa HOM05D006654 ORTHO05D008201 1.5e-104 383.3 243 80.7
BcaC01g02588 Brassica carinata HOM05D006654 ORTHO05D008201 2.0e-104 382.9 243 79.4
PSO063G4350 Papaver somniferum HOM05D006654 ORTHO05D008201 2.0e-104 382.9 243 81.1
PSO782G1240 Papaver somniferum HOM05D006654 ORTHO05D008201 2.0e-104 382.9 243 81.1
Thhalv10004858m.g Eutrema salsugineum HOM05D006654 ORTHO05D008201 3.4e-104 382.1 243 79.4
SEGI_01164 Sequoiadendron giganteum HOM05D006654 ORTHO05D008201 4.4e-104 381.7 243 79.8
Glyma.20G249100 Glycine max HOM05D006654 ORTHO05D008201 5.8e-104 381.3 243 79.0
arahy.Tifrunner.gnm1.ann1.653AWM Arachis hypogaea HOM05D006654 ORTHO05D008201 7.6e-104 380.9 236 81.8
CARHR277290 Cardamine hirsuta HOM05D006654 ORTHO05D008201 9.9e-104 380.6 243 79.0
HPP92_000346 Vanilla planifolia HOM05D006654 ORTHO05D008201 1.3e-103 380.2 243 80.2
Nitab4.5_0004750g0080 Nicotiana tabacum HOM05D006654 ORTHO05D008201 2.2e-103 379.4 243 78.6
Peaxi162Scf00089g00632 Petunia axillaris HOM05D006654 ORTHO05D008201 2.2e-103 379.4 243 78.6
CDE05G1175 Ceratophyllum demersum HOM05D006654 ORTHO05D008201 2.9e-103 379.0 243 78.6
Phvul.007G001300 Phaseolus vulgaris HOM05D006654 ORTHO05D008201 2.9e-103 379.0 243 79.0
CAN.G352.15 Capsicum annuum HOM05D006654 ORTHO05D008201 3.8e-103 378.6 243 78.6
PGSC0003DMG402015240 Solanum tuberosum HOM05D006654 ORTHO05D008201 6.4e-103 377.9 243 78.2
Mapoly0061s0139 Marchantia polymorpha HOM05D006654 ORTHO05D008201 1.1e-102 377.1 243 77.4
Ca_11428_v3 Cicer arietinum L. HOM05D006654 ORTHO05D008201 4.2e-102 375.2 243 78.2
TPR.G39480 Trifolium pratense HOM05D006654 ORTHO05D008201 5.4e-102 374.8 243 77.8
Nitab4.5_0003282g0120 Nicotiana tabacum HOM05D006654 ORTHO05D008201 1.6e-101 373.2 243 77.8
Solyc03g111330.4 Solanum lycopersicum HOM05D006654 ORTHO05D008201 1.6e-101 373.2 243 77.8
Lj5g0001059 Lotus japonicus HOM05D006654 ORTHO05D008201 2.1e-101 372.9 243 77.4
Duzib068G1280 Durio zibethinus HOM05D006654 ORTHO05D008201 1.3e-100 370.2 243 79.4
Pp3c22_11190 Physcomitrium patens HOM05D006654 ORTHO05D008201 9.6e-99 364.0 243 75.3
Pp3c22_11201 Physcomitrium patens HOM05D006654 ORTHO05D008201 9.6e-99 364.0 243 75.3
SMO364G0616 Selaginella moellendorffii HOM05D006654 ORTHO05D008201 9.6e-99 364.0 255 73.3
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 1.8e-97 359.8 235 77.4
ATR0561G261 Amborella trichopoda HOM05D006654 ORTHO05D008201 4.0e-97 358.6 238 76.9
Pp3c18_15000 Physcomitrium patens HOM05D006654 ORTHO05D008201 6.9e-97 357.8 243 74.9
Oeu044257.1 Olea europaea HOM05D006654 ORTHO05D008201 4.5e-96 355.1 310 63.2
Dinv11162 Davidia involucrata HOM05D006654 ORTHO05D008201 2.1e-93 346.3 226 80.1
Gohir.A03G052100 Gossypium hirsutum HOM05D006654 ORTHO05D008201 2.1e-93 346.3 213 83.1
Hma1.2p1_0014F.1_g009570 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 2.1e-93 346.3 213 82.6
Sed0016483 Sechium edule HOM05D006654 ORTHO05D008201 3.0e-92 342.4 177 98.3
Atru.BG.190.p Acer truncatum HOM05D006654 ORTHO05D008201 8.7e-92 340.9 221 80.1
Nn3g16497 Nelumbo nucifera HOM05D006654 ORTHO05D008201 1.8e-89 333.2 178 93.8
Gohir.D03G115000 Gossypium hirsutum HOM05D006654 ORTHO05D008201 3.1e-89 332.4 178 94.9
COL.COLO4_28092 Corchorus olitorius HOM05D006654 ORTHO05D008201 2.0e-88 329.7 177 93.2
Ciclev10021838m.g Citrus clementina HOM05D006654 ORTHO05D008201 2.6e-88 329.3 179 93.3
Prupe.1G190000 Prunus persica HOM05D006654 ORTHO05D008201 7.1e-86 321.2 177 91.5
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 7.9e-85 317.8 179 87.7
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 7.9e-85 317.8 179 87.7
Sopen03g030460 Solanum pennellii HOM05D006654 ORTHO05D008201 7.9e-85 317.8 178 88.2
Zm00001eb305410 Zea mays HOM05D006654 ORTHO05D008201 1.0e-84 317.4 214 74.8
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 1.8e-84 316.6 179 87.2
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 1.8e-84 316.6 179 87.2
Ca_29862_v3 Cicer arietinum L. HOM05D006654 ORTHO05D008201 1.5e-83 313.5 177 87.6
Lj9A478G90 Lonicera japonica HOM05D006654 ORTHO05D008201 4.8e-82 308.5 185 87.0
Lalb_Chr06g0164681 Lupinus albus HOM05D006654 ORTHO05D008201 2.6e-80 302.8 243 67.9
Sabra15G0115700 Salix brachista HOM05D006654 ORTHO05D008201 2.6e-80 302.8 174 88.5
Psat6g243960 Pisum sativum HOM05D006654 ORTHO05D008201 6.7e-68 261.5 182 70.9
AUR62025924 Chenopodium quinoa HOM05D006654 ORTHO05D008201 2.4e-65 253.1 134 93.3
MSTRG.4601 Avicennia marina HOM05D006654 ORTHO05D008201 3.4e-64 249.2 134 93.3
CBR_g21852 Chara braunii HOM05D006654 ORTHO05D008201 6.5e-63 245.0 183 66.7
Hund10171 Selenicereus undatus HOM05D006654 ORTHO05D008201 1.5e-59 233.8 184 70.1
C09p09330 Brassica napus HOM05D006654 ORTHO05D008201 7.4e-51 204.9 130 81.5
BolC9t53845H Brassica oleracea HOM05D006654 ORTHO05D008201 7.4e-51 204.9 130 81.5
AagrBONN_evm.TU.Sc2ySwM_228.2755 Anthoceros agrestis HOM05D006654 ORTHO05D008201 2.8e-50 203.0 150 66.0
BcaC04g23328 Brassica carinata HOM05D006654 ORTHO05D008201 1.8e-49 200.3 125 82.4
MCO06G092 Micromonas commoda HOM05D006654 ORTHO05D008201 3.7e-42 176.0 249 44.6
SalBow1G2859 Salvia bowleyana HOM05D006654 ORTHO05D008201 6.3e-42 175.3 97 93.8
SalBow1G7869 Salvia bowleyana HOM05D006654 ORTHO05D008201 6.3e-42 175.3 97 93.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.2e-40 171.0 110 77.3
LjContig00075g0008356 Lotus japonicus HOM05D006654 ORTHO05D008201 7.2e-38 161.8 182 54.9
Prupe.2G008500 Prunus persica HOM05D006654 ORTHO05D008201 1.3e-31 141.0 76 97.4
SHI10786 Sapria himalayana HOM05D006654 ORTHO05D008201 1.8e-28 130.6 85 70.6
Cre12.g485750 Chlamydomonas reinhardtii HOM05D006654 ORTHO05D008201 2.3e-28 130.2 246 34.1
PRCOL_00005389 Prasinoderma coloniale HOM05D006654 ORTHO05D008201 2.8e-26 123.2 255 32.9
BcaB04g19916 Brassica carinata HOM05D006654 ORTHO05D008201 1.3e-23 114.4 90 71.1
CBR_g70955 Chara braunii HOM05D006654 ORTHO05D008201 9.5e-22 108.2 60 90.0
Pp3c19_20620 Physcomitrium patens HOM05D006654 ORTHO05D008201 1.5e-19 100.9 92 63.0
Lsat_1_v5_gn_6_64721 Lactuca sativa HOM05D001937 ORTHO05D003828 2.0e-16 90.5 52 86.5
RcHm_v2.0_Chr7g0215371 Rosa chinensis HOM05D006654 ORTHO05D008201 1.7e-10 70.9 91 45.1
BolC5t32228H Brassica oleracea HOM05D007422 ORTHO05D009333 3.2e-09 66.6 118 33.9
Carub.0001s3836 Capsella rubella HOM05D007422 ORTHO05D009333 3.2e-09 66.6 118 33.9
CARHR039170 Cardamine hirsuta HOM05D007422 ORTHO05D009333 3.2e-09 66.6 118 34.7
BcaC05g27531 Brassica carinata HOM05D007422 ORTHO05D009333 9.2e-09 65.1 118 33.9
A05p20740 Brassica napus HOM05D007422 ORTHO05D009333 9.2e-09 65.1 118 33.1
C05p35090 Brassica napus HOM05D007422 ORTHO05D009333 9.2e-09 65.1 118 33.9
BraA05t20982Z Brassica rapa HOM05D007422 ORTHO05D009333 9.2e-09 65.1 118 33.1
Thhalv10011860m.g Eutrema salsugineum HOM05D007422 ORTHO05D009333 1.6e-08 64.3 118 33.1
CAN.G176.15 Capsicum annuum HOM05D002321 ORTHO05D007292 2.1e-08 63.9 38 78.9
Sp1g36060 Schrenkiella parvula HOM05D007422 ORTHO05D009333 2.1e-08 63.9 117 35.0
AT1G49170 Arabidopsis thaliana HOM05D007422 ORTHO05D009333 4.6e-08 62.8 114 33.3
AL1G56040 Arabidopsis lyrata HOM05D007422 ORTHO05D009333 1.0e-07 61.6 114 33.3
Cfa002851 Carpinus fangiana HOM05D007422 ORTHO05D009333 1.7e-07 60.8 104 33.7
Ah.02g122030 Amaranthus hybridus HOM05D007422 ORTHO05D009333 2.3e-07 60.5 91 34.1
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 2.3e-07 60.5 31 93.5
Aa31LG10G5060 Aethionema arabicum HOM05D007422 ORTHO05D009333 3.0e-07 60.1 107 33.6
SEGI_34968 Sequoiadendron giganteum HOM05D007422 ORTHO05D009333 3.0e-07 60.1 105 35.2
Hund04464 Selenicereus undatus HOM05D007422 ORTHO05D009333 3.9e-07 59.7 109 32.1
SGA_v2.0_scaffold137G35131 Striga asiatica HOM05D007422 ORTHO05D009333 5.0e-07 59.3 97 29.9
Glyma.06G150900 Glycine max HOM05D007422 ORTHO05D009333 6.6e-07 58.9 96 33.3
Medtr3g095670 Medicago truncatula HOM05D007422 ORTHO05D009333 6.6e-07 58.9 97 34.0
Psat5g063240 Pisum sativum HOM05D007422 ORTHO05D009333 6.6e-07 58.9 105 31.4
TPR.G18719 Trifolium pratense HOM05D007422 ORTHO05D009333 6.6e-07 58.9 105 32.4
QL06p030244 Quercus lobata HOM05D007422 ORTHO05D009333 8.6e-07 58.5 103 29.1
Atru.chr4.503 Acer truncatum HOM05D007422 ORTHO05D009333 1.1e-06 58.2 89 32.6
Cpa.g.sc42.105 Carica papaya HOM05D007422 ORTHO05D009333 1.1e-06 58.2 96 32.3
Mapoly0054s0054 Marchantia polymorpha HOM05D007422 ORTHO05D009333 1.5e-06 57.8 94 34.0
TAR628G0864 Trochodendron aralioides HOM05D007422 ORTHO05D009333 1.5e-06 57.8 98 28.6
Ciclev10026766m.g Citrus clementina HOM05D007422 ORTHO05D009333 1.9e-06 57.4 90 33.3
CiPaw.04G085200 Carya illinoinensis HOM05D007422 ORTHO05D009333 2.5e-06 57.0 104 30.8
Glyma.04G215300 Glycine max HOM05D007422 ORTHO05D009333 2.5e-06 57.0 96 31.2
Gohir.D04G029700 Gossypium hirsutum HOM05D007422 ORTHO05D009333 3.3e-06 56.6 97 30.9
Gorai.012G032800 Gossypium raimondii HOM05D007422 ORTHO05D009333 3.3e-06 56.6 97 30.9
THA.LOC104821861 Tarenaya hassleriana HOM05D007422 ORTHO05D009333 3.3e-06 56.6 116 28.4
TWI75G1659 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 3.3e-06 56.6 102 32.4
MELO3C023262.2 Cucumis melo HOM05D007422 ORTHO05D009333 5.6e-06 55.8 114 28.9
Phvul.009G147900 Phaseolus vulgaris HOM05D007422 ORTHO05D009333 5.6e-06 55.8 96 33.3
PGR102G2924 Punica granatum HOM05D007422 ORTHO05D009333 5.6e-06 55.8 96 31.2
PGSC0003DMG400018421 Solanum tuberosum HOM05D007422 ORTHO05D009333 5.6e-06 55.8 86 30.2
VMungo1309G2444 Vigna mungo HOM05D007422 ORTHO05D009333 5.6e-06 55.8 96 33.3
HanXRQChr17g0559811 Helianthus annuus HOM05D007422 ORTHO05D009333 7.3e-06 55.5 103 31.1
CAN.G900.53 Capsicum annuum HOM05D007422 ORTHO05D009333 9.5e-06 55.1 86 31.4
Gohir.A05G386900 Gossypium hirsutum HOM05D007422 ORTHO05D009333 9.5e-06 55.1 97 30.9
Lsat_1_v5_gn_8_142161 Lactuca sativa HOM05D007422 ORTHO05D009333 9.5e-06 55.1 102 31.4
MD05G1015900 Malus domestica HOM05D007422 ORTHO05D009333 9.5e-06 55.1 100 30.0
Solyc03g078350.3 Solanum lycopersicum HOM05D007422 ORTHO05D009333 9.5e-06 55.1 84 31.0
Sopen03g021130 Solanum pennellii HOM05D007422 ORTHO05D009333 9.5e-06 55.1 84 31.0


User provided reference genes

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