Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 3.7e-306 1054.7 822 100.0
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.1e-201 707.6 711 90.3
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 4.9e-197 692.2 711 88.7
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.6e-152 544.3 716 79.5
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 2.5e-121 440.7 672 71.7
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.2e-120 437.6 715 73.3
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 8.2e-120 435.6 624 79.3
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 2.9e-117 427.2 715 72.7
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 1.9e-116 424.5 619 79.5
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.2e-115 421.8 715 73.4
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.7e-115 420.6 689 73.4
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 3.6e-115 420.2 715 73.6
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 5.1e-114 416.4 705 72.1
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 2.6e-113 414.1 620 77.9
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 5.3e-111 406.4 727 68.5
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 7.0e-111 406.0 716 63.1
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 2.6e-110 404.1 713 68.7
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 8.5e-109 399.1 701 70.3
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.9e-108 397.9 719 69.1
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 3.2e-108 397.1 714 71.3
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 1.2e-107 395.2 721 68.0
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 4.7e-107 393.3 717 68.9
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 4.7e-107 393.3 680 73.4
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 6.1e-107 392.9 716 68.9
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 2.3e-106 391.0 689 71.6
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.0e-105 387.9 715 68.5
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 2.6e-105 387.5 725 68.1
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 3.3e-105 387.1 676 72.9
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 6.3e-104 382.9 676 71.3
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.7e-101 374.8 710 67.9
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.1e-100 372.1 721 69.8
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 1.1e-100 372.1 660 70.8
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 3.2e-100 370.5 689 67.8
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 4.2e-100 370.2 678 68.9
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 2.1e-99 367.9 558 80.6
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 2.7e-99 367.5 623 75.8
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 8.8e-98 362.5 688 68.3
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 8.8e-98 362.5 621 70.0
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 8.8e-98 362.5 659 71.9
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 1.5e-97 361.7 616 70.5
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 2.6e-97 360.9 615 70.1
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 3.4e-97 360.5 616 70.3
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 7.5e-97 359.4 715 66.2
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.3e-96 358.6 620 74.0
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 1.7e-96 358.2 709 66.3
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 2.2e-96 357.8 691 68.0
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 8.3e-96 355.9 614 69.9
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.8e-95 354.8 619 70.0
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 2.4e-95 354.4 623 72.6
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 2.4e-95 354.4 701 68.8
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 3.1e-95 354.0 622 74.0
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 4.1e-95 353.6 614 69.7
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 7.0e-95 352.8 621 72.6
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 1.2e-94 352.1 670 68.1
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 2.0e-94 351.3 665 70.4
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.7e-94 350.9 597 73.5
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 4.5e-94 350.1 719 66.3
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 2.9e-93 347.4 679 67.7
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 5.5e-92 343.2 618 73.8
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 7.2e-92 342.8 661 69.4
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 2.1e-91 341.3 623 70.3
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 8.0e-91 339.3 630 71.6
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.0e-90 339.0 618 71.5
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.4e-90 338.6 714 65.5
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 3.0e-90 337.4 765 59.1
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 6.8e-90 336.3 658 69.9
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.4e-89 334.0 622 71.5
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 7.5e-89 332.8 622 72.2
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 2.2e-88 331.3 623 72.1
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 3.7e-88 330.5 737 61.5
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 6.3e-88 329.7 726 65.0
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 3.1e-87 327.4 450 67.3
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 9.1e-87 325.9 704 66.1
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.0e-85 322.4 619 71.6
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 5.0e-85 320.1 565 74.3
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 1.9e-84 318.2 580 72.2
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 9.5e-84 315.8 409 68.2
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 2.1e-83 314.7 663 62.7
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 3.0e-82 310.8 676 66.1
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 8.9e-82 309.3 666 68.0
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 2.2e-80 304.7 618 67.2
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 4.9e-80 303.5 661 66.3
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 5.4e-79 300.1 578 69.2
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 5.4e-79 300.1 739 61.8
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.7e-77 295.0 663 65.8
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 2.3e-77 294.7 487 84.2
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 1.2e-75 288.9 672 64.4
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 4.7e-75 287.0 343 48.7
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 5.8e-73 280.0 681 65.2
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 7.5e-73 279.6 626 66.9
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 7.5e-73 279.6 316 50.0
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 1.3e-72 278.9 323 49.2
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 2.4e-71 274.6 389 44.5
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.6e-70 271.9 385 68.1
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 2.3e-69 268.1 233 56.7
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 1.4e-66 258.8 272 52.2
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 3.2e-55 221.1 487 76.6
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 3.6e-51 207.6 502 74.9
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 1.3e-48 199.1 498 73.3
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 2.4e-47 194.9 338 58.6
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 8.4e-40 169.9 546 62.5
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.4e-34 152.5 392 87.0
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.7e-30 138.3 164 47.6
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 6.2e-27 127.1 82 76.8
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 1.1e-26 126.3 82 73.2
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 4.0e-26 124.4 77 80.5
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 5.8e-25 120.6 127 50.4
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 1.9e-23 115.5 202 32.7
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.5e-20 105.1 78 65.4
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 3.3e-20 104.8 184 32.6
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.6e-19 102.4 68 73.5
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 9.0e-18 96.7 194 29.9
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 5.8e-17 94.0 426 75.6
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 7.9e-14 83.6 51 80.4
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 1.4e-10 72.8 56 64.3
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 6.9e-10 70.5 141 40.4
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 5.5e-07 60.8 160 29.4
TPR.G24441 Trifolium pratense HOM05D007098 ORTHO05D008793 5.5e-07 60.8 47 68.1
Os04g0488200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 7.9e-06 57.0 107 29.0


User provided reference genes

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