Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.3e-265 918.3 453 100.0
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 2.0e-229 798.9 468 85.7
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 7.5e-216 753.8 467 81.8
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 2.8e-186 655.6 463 72.8
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 7.6e-152 541.2 468 59.2
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 3.8e-151 538.9 465 59.4
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.8e-140 503.4 468 56.2
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.8e-137 493.4 467 55.0
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.6e-136 489.6 469 53.7
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 3.2e-134 482.6 548 49.1
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 7.2e-134 481.5 469 53.1
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.6e-133 480.3 466 54.3
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.6e-133 480.3 468 53.4
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 2.3e-132 476.5 466 53.9
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 8.8e-132 474.6 467 51.0
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 9.7e-131 471.1 473 51.4
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.7e-127 460.3 465 48.8
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 2.5e-126 456.4 470 51.3
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 4.7e-125 452.2 472 48.1
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 3.9e-124 449.1 472 48.9
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 3.3e-123 446.0 470 49.6
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 9.7e-123 444.5 416 53.1
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.8e-121 440.3 405 53.6
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 3.1e-121 439.5 467 47.5
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 3.1e-121 439.5 464 49.6
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 6.5e-119 431.8 466 49.4
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 3.6e-117 426.0 469 46.5
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 8.0e-117 424.9 467 46.9
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 9.7e-115 417.9 478 46.4
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 1.3e-114 417.5 467 46.5
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 8.2e-114 414.8 446 48.4
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 5.3e-113 412.1 466 45.9
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.2e-112 411.0 466 46.1
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 2.0e-112 410.2 463 45.6
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.7e-111 407.1 466 47.0
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 2.9e-111 406.4 463 46.4
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 5.0e-111 405.6 472 44.9
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 8.5e-111 404.8 463 44.7
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 8.5e-111 404.8 463 44.7
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 4.2e-110 402.5 467 45.6
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 1.2e-109 401.0 518 42.9
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.7e-109 399.8 465 45.2
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 2.0e-107 393.7 463 45.6
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.6e-104 384.0 462 42.6
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.6e-104 384.0 491 44.2
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.5e-104 382.9 458 45.6
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.2e-101 374.4 454 45.2
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 3.0e-100 369.8 472 43.9
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 5.7e-99 365.5 470 42.1
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.3e-98 364.4 487 42.9
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.7e-98 362.8 441 46.0
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.7e-98 362.8 441 45.8
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 3.7e-98 362.8 473 42.7
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 4.9e-98 362.5 441 45.8
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 4.1e-97 359.4 471 42.9
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.0e-95 354.8 466 43.3
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 5.0e-95 352.4 375 48.5
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 3.3e-94 349.7 474 43.7
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 1.6e-93 347.4 473 41.9
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.1e-93 347.1 473 41.9
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 1.0e-92 344.7 473 41.0
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 3.1e-92 343.2 380 48.7
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.0e-92 342.8 473 41.9
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.5e-91 340.9 532 40.0
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 2.0e-91 340.5 481 43.0
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 7.5e-91 338.6 450 43.3
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.7e-90 337.4 471 39.7
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.3e-90 335.1 501 39.5
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 8.3e-90 335.1 450 43.1
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 1.2e-88 331.3 381 49.3
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.6e-88 330.9 494 39.5
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.7e-88 330.1 476 40.8
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 8.6e-87 325.1 414 42.5
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.6e-85 320.9 357 46.2
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 2.3e-84 317.0 480 39.8
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.0e-83 313.9 471 39.5
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 2.6e-83 313.5 407 45.2
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 2.9e-82 310.1 461 39.0
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 4.9e-82 309.3 470 40.2
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 6.4e-82 308.9 459 38.1
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.1e-81 308.1 455 40.4
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.9e-81 307.4 471 38.0
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 5.4e-81 305.8 459 38.1
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 3.9e-79 299.7 460 38.0
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 5.6e-78 295.8 467 36.4
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.2e-77 294.7 480 36.7
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 1.6e-77 294.3 489 36.8
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 2.8e-77 293.5 479 37.8
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 8.1e-77 292.0 475 35.8
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.1e-76 291.6 480 36.5
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.1e-76 291.6 458 37.8
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.4e-76 291.2 459 39.2
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 1.8e-76 290.8 398 41.5
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.3e-76 290.4 472 37.9
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 8.9e-76 288.5 460 37.2
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 8.9e-76 288.5 460 35.9
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 2.0e-75 287.3 477 38.4
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.0e-75 287.3 458 37.3
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 4.4e-75 286.2 468 36.3
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 4.4e-75 286.2 459 39.0
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 9.9e-75 285.0 473 37.6
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.7e-74 284.3 473 37.2
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.7e-74 284.3 473 37.2
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 2.2e-74 283.9 462 37.2
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 6.4e-74 282.3 460 37.2
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.9e-73 280.8 459 37.5
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.9e-73 280.8 263 52.9
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 3.2e-73 280.0 483 35.4
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 2.1e-72 277.3 463 37.1
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 4.6e-72 276.2 291 49.1
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.1e-70 271.6 464 36.6
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 3.3e-70 270.0 242 55.8
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 3.6e-69 266.5 466 38.0
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 1.1e-68 265.0 458 34.5
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.4e-68 263.8 391 39.6
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 3.8e-66 256.5 467 33.4
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 3.8e-66 256.5 467 33.4
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 2.4e-65 253.8 444 35.8
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 5.4e-65 252.7 469 33.3
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 7.1e-65 252.3 491 32.8
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 2.1e-64 250.8 465 33.1
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 2.3e-63 247.3 460 33.0
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.1e-62 245.0 333 41.1
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 1.5e-62 244.6 460 32.6
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 4.7e-61 239.6 415 37.6
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.8e-60 237.7 488 33.2
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 2.4e-60 237.3 498 32.1
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 5.3e-60 236.1 462 32.7
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.0e-59 234.2 473 33.2
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 6.4e-58 229.2 490 32.9
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 3.2e-57 226.9 440 32.5
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 4.2e-57 226.5 379 36.7
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 7.1e-57 225.7 257 49.8
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 3.3e-54 216.9 281 42.0
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 3.8e-50 203.4 310 41.0
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.8e-50 203.4 327 37.9
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 2.7e-48 197.2 509 28.5
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 4.6e-48 196.4 478 32.6
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 4.6e-48 196.4 311 36.7
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 3.1e-44 183.7 446 29.6
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 4.9e-42 176.4 309 36.2
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 1.4e-41 174.9 280 40.7
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.9e-41 174.5 133 61.7
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 5.6e-38 162.9 174 50.0
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.8e-37 160.6 126 60.3
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.8e-36 157.9 362 29.0
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.1e-36 157.1 196 45.4
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 6.9e-36 156.0 291 35.7
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 7.6e-35 152.5 146 53.4
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 7.1e-33 146.0 243 36.6
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 8.2e-21 105.9 430 23.0
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.9e-17 94.7 208 30.3
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 7.9e-16 89.4 91 49.5
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 8.8e-15 85.9 300 24.3
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 1.5e-14 85.1 63 66.7
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 3.3e-14 84.0 61 60.7
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.3e-13 82.0 128 39.1
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 1.1e-12 79.0 60 61.7
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 4.1e-12 77.0 110 41.8
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.1e-09 68.9 153 30.7
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 6.1e-08 63.2 97 40.2
Cpa.g.sc10.94 Carica papaya HOM05D004162 ORTHO05D004543 1.0e-07 62.4 37 70.3
Dinv32093 Davidia involucrata HOM05D004162 ORTHO05D004543 2.3e-07 61.2 46 63.0
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.5e-06 58.5 144 29.2
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 2.6e-06 57.8 56 46.4


User provided reference genes

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