Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C000358.2 Cucumis melo HOM05D001137 ORTHO05D015495 3.2e-34 147.9 76 100.0
MELO3C032927.2 Cucumis melo HOM05D001137 ORTHO05D015495 1.5e-31 139.0 76 93.4
MELO3C019218.2 Cucumis melo HOM05D001137 ORTHO05D015495 5.6e-31 137.1 76 92.1
MELO3C024609.2 Cucumis melo HOM05D001137 ORTHO05D015495 3.1e-29 131.3 76 88.2
MELO3C031209.2 Cucumis melo HOM05D001137 ORTHO05D015495 9.8e-28 126.3 72 90.3
MELO3C004231.2 Cucumis melo HOM05D001137 ORTHO05D001967 8.9e-21 103.2 55 96.4
CsaV3_2G006540 Cucumis sativus L. HOM05D001137 ORTHO05D001967 8.9e-21 103.2 55 96.4
ClCG02G015540 Citrullus lanatus HOM05D001137 ORTHO05D001967 2.0e-20 102.1 55 94.5
Sed0004131 Sechium edule HOM05D001137 ORTHO05D001967 2.2e-19 98.6 55 92.7
Sed0022056 Sechium edule HOM05D001137 ORTHO05D001967 6.4e-19 97.1 55 87.3
RcHm_v2.0_Chr3g0455341 Rosa chinensis HOM05D001137 ORTHO05D001967 2.7e-17 91.7 55 80.0
FAN05G3662 Fragaria x ananassa HOM05D001137 ORTHO05D001967 4.6e-17 90.9 55 80.0
Prupe.6G322800 Prunus persica HOM05D001137 ORTHO05D001967 4.6e-17 90.9 53 83.0
FAN09G3209 Fragaria x ananassa HOM05D001137 ORTHO05D001967 1.0e-16 89.7 55 78.2
MD12G1216500 Malus domestica HOM05D001137 ORTHO05D001967 1.0e-16 89.7 53 81.1
MD04G1202500 Malus domestica HOM05D001137 ORTHO05D001967 1.7e-16 89.0 53 81.1
TWI12G0524 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 1.7e-16 89.0 57 78.9
Dinv30786 Davidia involucrata HOM05D001137 ORTHO05D001967 3.0e-16 88.2 53 83.0
Nitab4.5_0002344g0120 Nicotiana tabacum HOM05D001137 ORTHO05D001967 3.0e-16 88.2 55 80.0
GSVIVG01031116001 Vitis vinifera HOM05D001137 ORTHO05D001967 3.9e-16 87.8 53 83.0
Ciclev10000504m.g Citrus clementina HOM05D001137 ORTHO05D001967 1.1e-15 86.3 53 81.1
FAN02G2722 Fragaria x ananassa HOM05D001137 ORTHO05D001967 1.5e-15 85.9 55 76.4
Peaxi162Scf00037g00923 Petunia axillaris HOM05D001137 ORTHO05D001967 1.5e-15 85.9 53 79.2
Solyc01g099350.3 Solanum lycopersicum HOM05D001137 ORTHO05D001967 3.3e-15 84.7 53 81.1
Sopen01g042910 Solanum pennellii HOM05D001137 ORTHO05D001967 3.3e-15 84.7 53 81.1
PGSC0003DMG400024701 Solanum tuberosum HOM05D001137 ORTHO05D001967 3.3e-15 84.7 53 81.1
vmacro04982 Vaccinium macrocarpon HOM05D001137 ORTHO05D001967 3.3e-15 84.7 55 76.4
Dinv40308 Davidia involucrata HOM05D001137 ORTHO05D001967 4.3e-15 84.3 53 79.2
Oeu020840.1 Olea europaea HOM05D001137 ORTHO05D001967 4.3e-15 84.3 52 80.8
CANSAT54G2339 Cannabis sativa HOM05D001137 ORTHO05D001967 7.3e-15 83.6 52 76.9
Thecc.05G311100 Theobroma cacao HOM05D001137 ORTHO05D001967 9.5e-15 83.2 55 72.7
Haze_04162 Corylus avellana HOM05D001137 ORTHO05D001967 1.2e-14 82.8 54 77.8
TWI56G1154 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 1.2e-14 82.8 57 73.7
HanXRQChr11g0339451 Helianthus annuus HOM05D001137 ORTHO05D001967 1.6e-14 82.4 53 77.4
Lsat_1_v5_gn_9_87501 Lactuca sativa HOM05D001137 ORTHO05D001967 1.6e-14 82.4 53 77.4
Nitab4.5_0004754g0030 Nicotiana tabacum HOM05D001137 ORTHO05D001967 1.6e-14 82.4 52 76.9
Sc09g0003040 Simmondsia chinensis HOM05D001137 ORTHO05D001967 1.6e-14 82.4 72 63.9
Actinidia23650 Actinidia chinensis HOM05D001137 ORTHO05D001967 2.8e-14 81.6 53 79.2
Gohir.A11G266400 Gossypium hirsutum HOM05D001137 ORTHO05D001967 2.8e-14 81.6 55 72.7
Gohir.D11G276700 Gossypium hirsutum HOM05D001137 ORTHO05D001967 2.8e-14 81.6 55 72.7
Gorai.007G298800 Gossypium raimondii HOM05D001137 ORTHO05D001967 2.8e-14 81.6 55 72.7
QL03p012727 Quercus lobata HOM05D001137 ORTHO05D001967 2.8e-14 81.6 53 77.4
CAN.G1034.50 Capsicum annuum HOM05D001137 ORTHO05D001967 3.6e-14 81.3 53 77.4
CiPaw.07G020200 Carya illinoinensis HOM05D001137 ORTHO05D001967 4.7e-14 80.9 53 75.5
COL.COLO4_10493 Corchorus olitorius HOM05D001137 ORTHO05D001967 4.7e-14 80.9 55 72.7
Duzib106G0557 Durio zibethinus HOM05D001137 ORTHO05D001967 4.7e-14 80.9 55 72.7
Eucgr.B01931 Eucalyptus grandis HOM05D001137 ORTHO05D001967 4.7e-14 80.9 57 73.7
Duzib128G1578 Durio zibethinus HOM05D001137 ORTHO05D001967 6.2e-14 80.5 55 70.9
Actinidia05688 Actinidia chinensis HOM05D001137 ORTHO05D001967 1.1e-13 79.7 53 77.4
Cfa006613 Carpinus fangiana HOM05D001137 ORTHO05D001967 1.1e-13 79.7 53 75.5
ECA236G0157 Erigeron canadensis HOM05D000001 ORTHO05D001967 1.1e-13 79.7 72 63.9
Rhsim07G0183300 Rhododendron simsii HOM05D001137 ORTHO05D001967 1.1e-13 79.7 55 72.7
TAR633G1242 Trochodendron aralioides HOM05D001137 ORTHO05D001967 1.1e-13 79.7 70 65.7
Gohir.A13G108500 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.4e-13 79.3 55 69.1
Gorai.013G125100 Gossypium raimondii HOM05D001137 ORTHO05D001967 1.4e-13 79.3 55 69.1
RcHm_v2.0_Chr4g0393251 Rosa chinensis HOM05D001137 ORTHO05D015495 1.4e-13 79.3 53 71.7
RcHm_v2.0_Chr5g0019041 Rosa chinensis HOM05D001137 ORTHO05D015495 1.4e-13 79.3 53 71.7
Nn5g30054 Nelumbo nucifera HOM05D001137 ORTHO05D001967 1.8e-13 79.0 70 65.7
SGA_v2.0_scaffold80G25790 Striga asiatica HOM05D001137 ORTHO05D001967 1.8e-13 79.0 55 69.1
Lj5g0027868 Lotus japonicus HOM05D001137 ORTHO05D001967 2.4e-13 78.6 55 76.4
Oeu012110.2 Olea europaea HOM05D001137 ORTHO05D001967 5.2e-13 77.4 54 70.4
Gohir.A13G174200 Gossypium hirsutum HOM05D001137 ORTHO05D001967 6.8e-13 77.0 52 69.2
Hund07086 Selenicereus undatus HOM05D001137 ORTHO05D015495 8.9e-13 76.6 54 74.1
Hund07088 Selenicereus undatus HOM05D001137 ORTHO05D001967 8.9e-13 76.6 56 73.2
Manes.09G169100 Manihot esculenta HOM05D001137 ORTHO05D001967 1.2e-12 76.3 53 73.6
Duzib177G0730 Durio zibethinus HOM05D001137 ORTHO05D001967 1.5e-12 75.9 55 67.3
CSS0025432 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 2.0e-12 75.5 52 75.0
Ca_10122_v3 Cicer arietinum L. HOM05D001137 ORTHO05D001967 2.0e-12 75.5 53 75.5
Migut.N01989 Erythranthe guttata HOM05D001137 ORTHO05D001967 2.0e-12 75.5 54 66.7
BcaC05g30125 Brassica carinata HOM05D001137 ORTHO05D001967 2.6e-12 75.1 54 74.1
Glyma.20G235500 Glycine max HOM05D001137 ORTHO05D001967 3.4e-12 74.7 52 76.9
Gohir.A11G295100 Gossypium hirsutum HOM05D001137 ORTHO05D001967 3.4e-12 74.7 55 67.3
Gohir.D11G309900 Gossypium hirsutum HOM05D001137 ORTHO05D001967 3.4e-12 74.7 55 67.3
Gohir.D13G111400 Gossypium hirsutum HOM05D001137 ORTHO05D001967 3.4e-12 74.7 55 65.5
Gorai.007G342000 Gossypium raimondii HOM05D001137 ORTHO05D001967 3.4e-12 74.7 55 67.3
Gorai.013G205300 Gossypium raimondii HOM05D001137 ORTHO05D001967 3.4e-12 74.7 52 67.3
AUR62000789 Chenopodium quinoa HOM05D001137 ORTHO05D001967 4.4e-12 74.3 53 75.5
AUR62005178 Chenopodium quinoa HOM05D001137 ORTHO05D001967 4.4e-12 74.3 53 75.5
DCAR_029395 Daucus carota HOM05D001137 ORTHO05D001967 4.4e-12 74.3 52 73.1
Hma1.2p1_1334F.1_g276250 Hydrangea macrophylla HOM05D001137 ORTHO05D001967 5.8e-12 73.9 55 70.9
Psat0s3231g0040 Pisum sativum HOM05D001137 ORTHO05D001967 5.8e-12 73.9 53 73.6
unitig_746.g26860 Utricularia gibba HOM05D001137 ORTHO05D001967 5.8e-12 73.9 55 65.5
MSTRG.27988 Avicennia marina HOM05D001137 ORTHO05D001967 7.6e-12 73.6 54 68.5
BcaC05g30123 Brassica carinata HOM05D001137 ORTHO05D001967 7.6e-12 73.6 53 73.6
C05p61810 Brassica napus HOM05D001137 ORTHO05D001967 7.6e-12 73.6 53 73.6
BolC5t34841H Brassica oleracea HOM05D001137 ORTHO05D001967 7.6e-12 73.6 53 73.6
BraA05t23031Z Brassica rapa HOM05D001137 ORTHO05D001967 7.6e-12 73.6 53 73.6
Nitab4.5_0002432g0050 Nicotiana tabacum HOM05D001137 ORTHO05D001967 7.6e-12 73.6 70 60.0
Aqoxy5G00704 Aquilegia oxysepala HOM05D001137 ORTHO05D001967 9.9e-12 73.2 53 71.7
Migut.N01976 Erythranthe guttata HOM05D001137 ORTHO05D001967 9.9e-12 73.2 52 65.4
Lalb_Chr02g0148181 Lupinus albus HOM05D001137 ORTHO05D001967 9.9e-12 73.2 53 73.6
TPR.G33177 Trifolium pratense HOM05D001137 ORTHO05D001967 9.9e-12 73.2 53 73.6
CDE01G0048 Ceratophyllum demersum HOM05D001137 ORTHO05D001967 1.3e-11 72.8 71 60.6
Manes.08G119300 Manihot esculenta HOM05D001137 ORTHO05D001967 1.3e-11 72.8 53 71.7
RcHm_v2.0_Chr4g0397481 Rosa chinensis HOM05D001137 ORTHO05D015495 1.3e-11 72.8 53 66.0
EL10Ac4g09377 Beta vulgaris HOM05D001137 ORTHO05D001967 1.7e-11 72.4 53 73.6
Glyma.03G236500 Glycine max HOM05D001137 ORTHO05D001967 2.2e-11 72.0 53 71.7
VMungo0540G2300 Vigna mungo HOM05D001137 ORTHO05D001967 2.2e-11 72.0 53 71.7
BcaC05g30147 Brassica carinata HOM05D001137 ORTHO05D015495 2.9e-11 71.6 53 71.7
Ca_05808_v3 Cicer arietinum L. HOM05D001137 ORTHO05D001967 2.9e-11 71.6 53 73.6
Glyma.19G234400 Glycine max HOM05D001137 ORTHO05D001967 2.9e-11 71.6 52 73.1
Potri.005G026900 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.9e-11 71.6 53 71.7
PGR031G2322 Punica granatum HOM05D001137 ORTHO05D001967 2.9e-11 71.6 52 73.1
HPP92_011343 Vanilla planifolia HOM05D001137 ORTHO05D001967 2.9e-11 71.6 72 55.6
CDE12G0037 Ceratophyllum demersum HOM05D001137 ORTHO05D001967 3.8e-11 71.2 71 59.2
arahy.Tifrunner.gnm1.ann1.6BI416 Arachis hypogaea HOM05D001137 ORTHO05D001967 4.9e-11 70.9 53 71.7
Medtr7g113200 Medicago truncatula HOM05D001137 ORTHO05D001967 4.9e-11 70.9 53 71.7
Nn3g21409 Nelumbo nucifera HOM05D001137 ORTHO05D001967 4.9e-11 70.9 52 71.2
Phvul.006G090700 Phaseolus vulgaris HOM05D001137 ORTHO05D001967 4.9e-11 70.9 52 71.2
SEGI_30119 Sequoiadendron giganteum HOM05D001137 ORTHO05D001967 4.9e-11 70.9 50 74.0
THA.LOC104802801 Tarenaya hassleriana HOM05D001137 ORTHO05D001967 4.9e-11 70.9 53 71.7
CSS0049898 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 6.4e-11 70.5 53 71.7
AL6G39400 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 8.4e-11 70.1 55 69.1
HanXRQChr14g0433311 Helianthus annuus HOM05D001137 ORTHO05D001967 8.4e-11 70.1 53 71.7
AT5G27630 Arabidopsis thaliana HOM05D001137 ORTHO05D001967 1.1e-10 69.7 55 69.1
Cc02_g31050 Coffea canephora HOM05D001137 ORTHO05D001967 1.1e-10 69.7 52 71.2
Lalb_Chr04g0260691 Lupinus albus HOM05D001137 ORTHO05D001967 1.1e-10 69.7 55 67.3
Potri.013G018800 Populus trichocarpa HOM05D001137 ORTHO05D001967 1.1e-10 69.7 53 69.8
TAR365G1066 Trochodendron aralioides HOM05D001137 ORTHO05D001967 1.1e-10 69.7 70 58.6
arahy.Tifrunner.gnm1.ann1.H0NCP1 Arachis hypogaea HOM05D001137 ORTHO05D001967 1.4e-10 69.3 53 69.8
Sabra13G0021400 Salix brachista HOM05D001137 ORTHO05D001967 1.4e-10 69.3 53 69.8
C02p58200 Brassica napus HOM05D001137 ORTHO05D001967 1.9e-10 68.9 55 67.3
BolC2t11887H Brassica oleracea HOM05D001137 ORTHO05D001967 1.9e-10 68.9 55 67.3
THA.LOC104821718 Tarenaya hassleriana HOM05D001137 ORTHO05D001967 1.9e-10 68.9 53 69.8
Atru.chr2.15 Acer truncatum HOM05D001137 ORTHO05D001967 2.4e-10 68.6 53 67.9
CARHR186160 Cardamine hirsuta HOM05D001137 ORTHO05D001967 2.4e-10 68.6 55 67.3
Sabra05G0032200 Salix brachista HOM05D001137 ORTHO05D001967 2.4e-10 68.6 53 69.8
Thhalv10020218m.g Eutrema salsugineum HOM05D001137 ORTHO05D001967 3.2e-10 68.2 53 67.9
Carub.0006s2496 Capsella rubella HOM05D001137 ORTHO05D001967 4.1e-10 67.8 55 67.3
BcaC09g47824 Brassica carinata HOM05D001137 ORTHO05D001967 5.4e-10 67.4 53 66.0
BraSC132t45504Z Brassica rapa HOM05D001137 ORTHO05D001967 5.4e-10 67.4 53 66.0
Sp2g20790 Schrenkiella parvula HOM05D001137 ORTHO05D015495 5.4e-10 67.4 55 70.9
BcaC03g17794 Brassica carinata HOM05D001137 ORTHO05D001967 7.1e-10 67.0 55 65.5
Sp3g04280 Schrenkiella parvula HOM05D001137 ORTHO05D001967 7.1e-10 67.0 52 67.3
ATR0706G044 Amborella trichopoda HOM05D001137 ORTHO05D001967 9.2e-10 66.6 53 67.9
BNapus_Darmor_BZH_scaffold_114p00080 Brassica napus HOM05D001137 ORTHO05D001967 9.2e-10 66.6 53 66.0
A02p38690 Brassica napus HOM05D001137 ORTHO05D001967 1.2e-09 66.2 52 65.4
BraA02t08845Z Brassica rapa HOM05D001137 ORTHO05D001967 1.2e-09 66.2 52 65.4
Lj5A442G8 Lonicera japonica HOM05D001137 ORTHO05D001967 1.2e-09 66.2 46 69.6
CARHR079760 Cardamine hirsuta HOM05D001137 ORTHO05D001967 1.6e-09 65.9 53 64.2
Nitab4.5_0002144g0040 Nicotiana tabacum HOM05D001137 ORTHO05D001967 1.6e-09 65.9 71 57.7
arahy.Tifrunner.gnm1.ann1.IB7YTW Arachis hypogaea HOM05D001137 ORTHO05D001967 2.1e-09 65.5 53 66.0
arahy.Tifrunner.gnm1.ann1.PM4BFB Arachis hypogaea HOM05D001137 ORTHO05D001967 2.1e-09 65.5 53 66.0
Thhalv10003780m.g Eutrema salsugineum HOM05D001137 ORTHO05D001967 2.1e-09 65.5 55 70.9
Aa31LG5G15960 Aethionema arabicum HOM05D001137 ORTHO05D001967 2.7e-09 65.1 53 66.0
Ah.04g160450 Amaranthus hybridus HOM05D001137 ORTHO05D001967 2.7e-09 65.1 53 66.0
BcaB04g19270 Brassica carinata HOM05D001643 ORTHO05D001580 2.7e-09 65.1 53 64.2
Carub.0003s0470 Capsella rubella HOM05D001137 ORTHO05D001967 2.7e-09 65.1 53 66.0
BolC1t05695H Brassica oleracea HOM05D001137 ORTHO05D001967 3.5e-09 64.7 53 66.0
PSO170G2566 Papaver somniferum HOM05D001137 ORTHO05D001967 3.5e-09 64.7 70 54.3
BraA03t12585Z Brassica rapa HOM05D001137 ORTHO05D001967 4.6e-09 64.3 63 55.6
BcaB04g19269 Brassica carinata HOM05D001643 ORTHO05D001580 6.0e-09 63.9 68 51.5
Os03g0835600 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D001967 6.0e-09 63.9 65 56.9
BcaB04g19268 Brassica carinata HOM05D001137 ORTHO05D001967 7.8e-09 63.5 53 62.3
C03p41510 Brassica napus HOM05D001137 ORTHO05D001967 7.8e-09 63.5 53 62.3
BolC3t16432H Brassica oleracea HOM05D001137 ORTHO05D001967 7.8e-09 63.5 53 62.3
PSO210G0810 Papaver somniferum HOM05D001137 ORTHO05D001967 1.0e-08 63.2 70 52.9
PGR083G1814 Punica granatum HOM05D001137 ORTHO05D001967 1.0e-08 63.2 52 65.4
AT3G05420 Arabidopsis thaliana HOM05D001137 ORTHO05D001967 1.7e-08 62.4 53 64.2
Ah.06g189620 Amaranthus hybridus HOM05D001137 ORTHO05D001967 2.3e-08 62.0 53 60.4
AL3G15980 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 2.3e-08 62.0 53 64.2
Lalb_Chr15g0077291 Lupinus albus HOM05D001137 ORTHO05D001967 2.3e-08 62.0 55 61.8
Zm00001eb063690 Zea mays HOM05D001137 ORTHO05D001967 3.0e-08 61.6 65 55.4
A03p34120 Brassica napus HOM05D001137 ORTHO05D001967 5.1e-08 60.8 53 62.3
Aa31LG11G9380 Aethionema arabicum HOM05D001137 ORTHO05D001967 1.1e-07 59.7 55 60.0
PSO210G3549 Papaver somniferum HOM05D001137 ORTHO05D001967 8.1e-06 53.5 75 45.3


User provided reference genes

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