Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 0.0e+00 1713.7 851 100.0
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 0.0e+00 1204.9 866 71.1
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 0.0e+00 1165.2 866 68.5
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 0.0e+00 1153.7 869 68.2
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 0.0e+00 1151.0 890 66.6
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 0.0e+00 1123.6 885 66.1
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 4.0e-287 991.5 870 61.0
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 6.0e-283 977.6 871 61.1
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.6e-275 953.0 633 77.6
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.0e-274 950.3 872 59.1
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 6.2e-272 941.0 867 57.8
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.3e-271 937.9 865 58.3
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 9.9e-270 933.7 852 57.9
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 7.1e-268 927.5 868 57.5
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 3.5e-267 925.2 868 56.2
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 2.3e-266 922.5 868 56.9
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 8.7e-266 920.6 870 56.6
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 5.6e-265 917.9 870 56.3
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.6e-264 916.4 870 55.4
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 6.2e-264 914.4 868 56.1
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.5e-262 909.8 855 58.0
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 1.3e-261 906.7 865 55.0
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 3.1e-255 885.6 868 54.0
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 3.4e-254 882.1 868 53.9
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 4.5e-254 881.7 868 54.1
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 6.9e-247 857.8 867 52.9
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.3e-245 853.6 865 53.6
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.9e-245 852.4 866 53.9
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.3e-242 842.8 872 54.5
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.5e-241 840.1 876 52.6
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.2e-240 836.3 870 51.8
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.0e-238 829.7 859 52.3
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 3.8e-237 825.5 872 52.5
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 3.8e-237 825.5 872 52.5
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.5e-233 813.5 895 51.7
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 4.4e-233 812.0 891 50.7
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 9.1e-231 804.3 891 50.6
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 5.9e-230 801.6 894 51.2
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 6.5e-229 798.1 891 50.3
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.2e-227 793.9 884 51.2
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.2e-227 793.9 891 49.9
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 2.3e-226 789.6 864 50.2
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 6.7e-226 788.1 902 49.8
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.3e-224 783.9 896 49.9
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.8e-224 782.7 916 48.9
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.1e-223 780.8 871 51.0
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 7.2e-220 768.1 893 49.5
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 9.4e-220 767.7 863 49.1
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.6e-219 766.9 837 51.0
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 8.0e-219 764.6 853 49.0
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.8e-218 763.5 851 52.1
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 2.2e-216 756.5 860 50.5
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 9.1e-215 751.1 855 49.2
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 3.5e-214 749.2 855 48.4
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 1.3e-213 747.3 850 48.6
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.1e-212 744.2 735 54.6
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 2.5e-212 743.0 858 48.6
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 9.4e-212 741.1 854 48.5
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 2.1e-211 740.0 843 49.2
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 2.1e-211 740.0 843 49.2
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 8.0e-211 738.0 842 48.0
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.0e-210 737.6 866 47.1
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.0e-210 735.7 879 46.8
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 8.8e-210 734.6 838 49.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 8.8e-210 734.6 852 48.2
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.7e-208 729.2 880 46.7
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.8e-208 728.8 878 46.5
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 1.1e-207 727.6 838 48.6
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.8e-207 726.9 863 48.2
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.8e-207 726.9 732 52.3
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 9.1e-207 724.5 872 46.9
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.2e-206 724.2 954 45.9
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.7e-206 723.0 837 48.7
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 2.9e-205 719.5 850 48.1
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 4.2e-204 715.7 859 46.6
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.6e-203 713.8 754 51.1
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 2.1e-203 713.4 844 48.6
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 4.7e-203 712.2 856 47.0
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 1.0e-202 711.1 923 45.4
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.0e-202 711.1 878 45.9
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.4e-202 710.7 856 46.6
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 3.0e-202 709.5 874 45.7
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 6.8e-202 708.4 851 46.8
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 8.9e-202 708.0 876 45.9
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 5.7e-201 705.3 840 47.9
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 9.8e-201 704.5 875 47.9
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.1e-199 701.0 858 46.2
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 7.0e-199 698.4 838 47.6
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 2.7e-198 696.4 829 48.7
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 7.8e-198 694.9 926 45.2
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.3e-197 694.1 852 47.5
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.3e-197 694.1 852 47.5
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.7e-197 693.7 570 64.4
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 1.5e-196 690.6 856 48.5
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 1.8e-194 683.7 782 47.6
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 6.0e-190 668.7 865 45.4
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.0e-189 666.4 671 54.5
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.9e-188 663.7 865 45.2
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 5.6e-188 662.1 872 45.3
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 8.0e-187 658.3 859 44.7
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.7e-182 643.3 802 46.5
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 3.6e-179 632.9 906 42.5
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.0e-173 614.8 327 92.0
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 5.1e-173 612.5 617 53.0
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 8.6e-173 611.7 768 47.1
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 4.6e-166 589.3 879 41.8
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 1.5e-164 584.3 861 41.6
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 4.0e-162 576.2 692 47.7
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.4e-161 573.2 738 45.7
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.0e-157 561.6 627 48.5
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.3e-149 534.6 865 40.9
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 5.1e-149 532.7 656 47.6
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.0e-144 518.5 680 43.2
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 3.5e-134 483.4 629 45.0
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 5.9e-129 466.1 552 50.0
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 2.7e-126 457.2 502 51.4
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.0e-112 409.8 535 46.4
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 1.0e-109 402.1 457 53.6
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 8.8e-109 399.1 357 56.6
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.8e-106 391.3 567 42.7
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 3.4e-100 370.5 652 36.0
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 2.3e-93 347.8 547 38.4
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 3.0e-93 347.4 477 43.4
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.2e-92 345.5 367 52.6
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.2e-89 335.5 972 30.0
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.8e-86 324.3 657 35.8
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 6.2e-78 296.6 199 78.4
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.7e-75 287.3 218 67.9
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 5.4e-74 283.5 671 30.0
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 4.6e-73 280.4 620 32.3
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 7.3e-71 273.1 525 34.5
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 6.8e-69 266.5 467 37.3
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 9.2e-66 256.1 191 72.3
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 7.8e-65 253.1 179 70.4
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 7.3e-63 246.5 184 67.9
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.2e-62 245.7 224 61.2
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 9.9e-60 236.1 321 47.0
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 1.3e-59 235.7 132 84.8
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 8.9e-53 213.0 173 65.9
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 5.8e-52 210.3 310 41.3
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 5.4e-50 203.8 172 57.0
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 8.7e-48 196.4 246 48.4
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 2.2e-43 181.8 194 52.1
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 9.3e-42 176.4 164 58.5
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 1.6e-41 175.6 163 57.7
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 9.6e-39 166.4 123 66.7
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.1e-37 162.9 155 58.1
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 5.3e-37 160.6 196 42.9
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 2.6e-36 158.3 117 62.4
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 3.4e-36 157.9 116 66.4
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 4.5e-36 157.5 154 57.1
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 4.5e-36 157.5 154 57.1
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 2.2e-35 155.2 116 64.7
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 8.4e-35 153.3 153 54.9
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.4e-34 152.5 1061 22.0
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 2.1e-33 148.7 148 56.1
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.8e-30 138.3 99 71.7
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.7e-30 137.9 95 73.7
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 4.5e-28 131.0 71 98.6
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 7.6e-28 130.2 273 32.2
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.1e-26 126.3 92 69.6
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 7.1e-26 123.6 249 32.5
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 3.1e-21 108.2 134 46.3
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 5.3e-21 107.5 338 25.7
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 9.0e-21 106.7 314 28.0
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 9.0e-21 106.7 80 61.2
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 5.0e-19 100.9 99 51.5
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.5e-18 98.6 202 35.6
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 6.7e-16 90.5 119 47.9
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.9e-15 89.0 83 57.8
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 4.1e-13 81.3 63 68.3
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.1e-13 81.3 64 67.2
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.9e-11 75.1 90 51.1
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.9e-11 75.1 56 62.5
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 4.6e-09 67.8 141 31.9
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 7.9e-09 67.0 64 62.5
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.4e-08 66.2 66 50.0
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.3e-08 65.5 49 63.3
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 1.3e-06 59.7 236 27.5


User provided reference genes

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