Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 1.0e-108 396.7 195 100.0
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 6.3e-79 297.7 199 78.4
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 6.6e-68 261.2 199 68.8
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 8.6e-68 260.8 199 68.3
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 8.6e-68 260.8 199 68.3
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 8.6e-68 260.8 199 68.3
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.2e-66 256.9 199 67.3
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 7.0e-62 241.1 199 64.8
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 8.9e-57 224.2 200 62.5
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 2.6e-56 222.6 191 62.8
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 1.3e-55 220.3 200 60.0
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.7e-55 219.9 200 61.0
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 4.9e-55 218.4 196 60.2
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 4.9e-55 218.4 191 61.8
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 4.9e-55 218.4 200 59.5
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.1e-54 217.2 197 60.9
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 5.4e-54 214.9 200 58.0
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 7.0e-54 214.5 197 59.9
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 4.6e-53 211.8 199 55.3
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 2.3e-52 209.5 191 61.8
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 5.0e-52 208.4 201 57.2
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 6.6e-52 208.0 197 56.9
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 2.5e-51 206.1 201 57.2
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 3.3e-51 205.7 189 58.7
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 7.3e-51 204.5 200 56.0
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.6e-50 203.4 197 56.9
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.6e-50 203.4 197 56.9
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.6e-50 203.4 197 56.9
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.1e-50 203.0 200 58.5
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-50 202.6 197 56.3
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 3.6e-50 202.2 194 57.2
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 4.7e-50 201.8 182 62.6
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 3.1e-49 199.1 200 52.5
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 8.9e-49 197.6 188 60.6
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.0e-48 196.4 177 59.3
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.6e-48 196.1 179 58.1
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 5.8e-48 194.9 192 56.8
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 5.8e-48 194.9 192 56.8
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.5e-48 194.5 179 58.1
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.7e-47 193.4 179 57.5
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 2.9e-47 192.6 185 55.7
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 4.9e-47 191.8 180 57.8
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-46 190.7 179 55.9
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.4e-46 190.3 180 55.0
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 3.2e-46 189.1 183 57.9
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 4.1e-46 188.7 185 56.8
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.1e-46 188.7 181 55.8
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 9.2e-46 187.6 182 56.6
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.6e-45 186.8 182 56.0
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.6e-45 186.8 181 55.2
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.1e-45 186.4 181 54.7
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.1e-45 186.4 180 56.7
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 2.7e-45 186.0 181 56.4
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.7e-45 186.0 181 55.2
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 4.6e-45 185.3 185 53.0
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 7.8e-45 184.5 181 55.2
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 7.8e-45 184.5 181 55.2
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 7.8e-45 184.5 191 49.7
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.0e-44 184.1 180 55.0
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.3e-44 183.7 175 54.3
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.3e-44 183.0 199 52.8
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.3e-44 183.0 190 52.1
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 3.0e-44 182.6 197 53.3
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 3.9e-44 182.2 201 51.7
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 5.1e-44 181.8 179 54.2
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.5e-43 180.3 182 53.8
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.9e-43 179.9 178 53.9
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 3.3e-43 179.1 181 53.0
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 7.3e-43 177.9 175 56.0
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.2e-42 177.2 175 56.0
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.2e-42 177.2 175 56.0
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.6e-42 176.8 179 53.1
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 2.1e-42 176.4 175 56.0
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.8e-42 176.0 175 55.4
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 2.8e-42 176.0 185 54.6
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-42 176.0 197 51.8
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.6e-42 175.6 199 53.8
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 3.6e-42 175.6 181 54.1
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 6.2e-42 174.9 183 54.1
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 6.2e-42 174.9 182 54.9
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 6.2e-42 174.9 181 53.0
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 6.2e-42 174.9 195 50.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 8.1e-42 174.5 192 50.5
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.4e-41 173.7 175 55.4
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 1.4e-41 173.7 175 55.4
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 1.4e-41 173.7 175 54.9
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 1.8e-41 173.3 175 54.9
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.1e-41 172.6 173 56.1
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 5.2e-41 171.8 192 50.5
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 1.5e-40 170.2 174 54.6
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.5e-40 170.2 182 53.8
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.0e-40 169.9 165 57.0
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 2.6e-40 169.5 196 51.0
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 3.4e-40 169.1 185 50.3
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.4e-40 168.7 179 55.9
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.7e-39 166.8 175 52.0
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 2.9e-39 166.0 182 50.5
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.4e-38 162.9 196 48.5
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 3.2e-38 162.5 177 52.5
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 5.4e-38 161.8 177 50.3
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 6.6e-36 154.8 143 58.0
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.1e-35 154.1 181 47.5
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 1.1e-35 154.1 181 47.0
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.5e-35 153.7 181 47.5
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 4.3e-35 152.1 173 48.0
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 9.6e-35 151.0 180 47.8
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-33 147.5 137 53.3
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 3.1e-33 146.0 128 62.5
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.2e-32 144.1 183 46.4
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.4e-32 142.5 176 50.6
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 9.9e-32 141.0 182 46.7
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 3.2e-30 136.0 136 52.9
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 2.1e-29 133.3 136 51.5
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 2.3e-28 129.8 186 40.9
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 7.3e-27 124.8 117 59.0
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.6e-26 123.6 118 57.6
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.9e-25 118.2 111 56.8
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 5.8e-24 115.2 113 53.1
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.2e-23 113.2 113 55.8
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 2.4e-22 109.8 95 55.8
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 7.1e-22 108.2 92 55.4
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 1.0e-20 104.4 100 51.0
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.3e-20 104.0 102 55.9
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 2.6e-16 89.7 58 81.0
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 7.1e-14 81.6 62 67.7
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 6.0e-13 78.6 124 41.9
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.0e-12 77.8 64 67.2
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.0e-12 77.8 58 63.8
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 1.8e-12 77.0 63 66.7
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 1.3e-10 70.9 106 43.4
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.5e-08 63.9 65 46.2
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 2.2e-07 60.1 62 54.8


User provided reference genes

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