Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 1.3e-145 519.6 252 100.0
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 2.8e-143 511.9 252 97.6
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 9.8e-141 503.4 252 96.0
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 8.0e-135 483.8 254 92.9
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 2.3e-134 482.3 252 90.5
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 2.6e-133 478.8 252 90.5
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 4.4e-133 478.0 252 90.5
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 5.8e-133 477.6 254 91.3
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.4e-131 473.0 252 90.5
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 2.4e-131 472.2 255 91.0
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 2.4e-131 472.2 255 88.6
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 7.0e-131 470.7 254 90.2
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 7.0e-131 470.7 254 90.2
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.2e-130 469.9 261 88.9
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 1.6e-130 469.5 252 88.1
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 2.1e-130 469.2 255 88.6
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 2.1e-130 469.2 252 88.5
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 2.1e-130 469.2 256 89.5
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 3.5e-130 468.4 252 89.3
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 3.5e-130 468.4 256 87.9
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 6.0e-130 467.6 252 88.5
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 6.0e-130 467.6 257 89.1
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 1.7e-129 466.1 256 88.7
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 2.3e-129 465.7 252 86.9
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 3.0e-129 465.3 252 88.9
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 3.9e-129 464.9 256 88.3
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 87.8
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 5.0e-129 464.5 256 88.3
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 5.0e-129 464.5 255 89.0
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 5.0e-129 464.5 253 87.7
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 6.6e-129 464.2 255 89.0
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 88.6
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.1e-128 463.4 254 88.6
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 1.5e-128 463.0 256 88.3
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.9e-128 462.6 255 88.2
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 88.6
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 3.3e-128 461.8 255 88.2
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 3.3e-128 461.8 256 87.5
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 3.3e-128 461.8 255 87.5
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 4.3e-128 461.5 253 88.5
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 4.3e-128 461.5 256 88.3
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 4.3e-128 461.5 252 86.5
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 5.6e-128 461.1 252 86.1
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 9.5e-128 460.3 252 87.7
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.2e-127 459.9 255 87.8
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 1.6e-127 459.5 256 87.5
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.6e-127 459.5 255 87.1
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 2.8e-127 458.8 253 88.1
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 2.8e-127 458.8 253 88.1
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 2.8e-127 458.8 252 88.5
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 3.6e-127 458.4 256 87.5
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 3.6e-127 458.4 255 86.7
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 3.6e-127 458.4 255 87.8
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 4.7e-127 458.0 253 88.1
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 4.7e-127 458.0 255 88.2
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 4.7e-127 458.0 255 85.9
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 8.1e-127 457.2 254 86.6
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 8.1e-127 457.2 255 87.1
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.1e-126 456.8 256 85.9
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.4e-126 456.4 255 87.5
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.4e-126 456.4 255 86.3
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 2.3e-126 455.7 256 86.7
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.3e-126 455.7 255 87.5
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.3e-126 455.7 255 87.1
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.3e-126 455.7 253 87.7
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 4.0e-126 454.9 253 87.7
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 87.1
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.8e-126 454.1 255 86.3
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 6.8e-126 454.1 254 86.6
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 8.9e-126 453.8 249 88.4
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 8.9e-126 453.8 249 88.4
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 8.9e-126 453.8 255 86.3
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 8.9e-126 453.8 255 86.7
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 1.5e-125 453.0 253 87.7
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 1.5e-125 453.0 255 85.9
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 85.9
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 3.4e-125 451.8 253 87.4
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 4.4e-125 451.4 256 85.9
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 4.4e-125 451.4 255 85.9
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 4.4e-125 451.4 255 86.3
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 85.9
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 7.5e-125 450.7 253 87.0
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 9.9e-125 450.3 255 85.5
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 6.4e-124 447.6 252 85.3
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 8.3e-124 447.2 255 85.1
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 1.9e-123 446.0 256 84.8
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 4.1e-123 444.9 254 83.5
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 5.4e-123 444.5 255 83.9
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 7.1e-123 444.1 255 84.7
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 9.2e-123 443.7 254 83.9
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 9.2e-123 443.7 256 84.4
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.2e-122 443.4 255 84.3
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 1.2e-122 443.4 255 85.1
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 3.5e-122 441.8 254 83.9
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.6e-122 441.4 239 90.0
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 6.0e-122 441.0 254 83.5
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 7.8e-122 440.7 257 81.3
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.0e-121 440.3 253 83.8
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.0e-121 440.3 253 86.2
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.9e-121 438.3 255 83.5
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 8.6e-121 437.2 255 82.7
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.5e-120 436.4 253 82.6
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 5.6e-120 434.5 255 81.6
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 7.3e-120 434.1 255 82.4
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 7.3e-120 434.1 306 72.5
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.6e-119 433.0 257 80.5
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 2.1e-119 432.6 237 87.8
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 6.2e-119 431.0 252 82.9
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.8e-118 429.5 257 79.4
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 2.6e-117 425.6 260 77.7
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 1.4e-115 419.9 283 74.9
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.2e-114 416.8 231 83.5
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 2.3e-113 412.5 252 81.0
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.4e-110 403.3 294 71.8
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 9.0e-110 400.6 259 79.5
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 5.8e-109 397.9 253 74.7
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 1.9e-107 392.9 229 79.5
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 4.6e-106 388.3 219 85.4
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 4.6e-106 388.3 249 72.3
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 6.0e-106 387.9 260 74.6
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.9e-104 382.9 233 76.4
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.6e-103 378.6 231 76.2
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.6e-103 378.6 231 76.2
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.2e-101 373.6 239 79.9
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 8.4e-100 367.5 231 77.5
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 5.4e-99 364.8 319 61.8
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 5.4e-99 364.8 231 77.9
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.2e-98 363.6 202 84.7
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 1.3e-97 360.1 229 74.7
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.3e-97 360.1 255 72.5
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.3e-95 353.6 229 72.9
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 1.0e-89 334.0 250 69.2
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 4.9e-84 315.1 161 93.2
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.4e-83 313.5 282 62.8
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 9.3e-83 310.8 160 92.5
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 6.7e-81 304.7 162 87.7
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 1.3e-79 300.4 170 87.1
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 2.8e-79 299.3 252 57.5
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 6.3e-79 298.1 201 73.6
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.4e-73 280.4 186 76.3
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 2.5e-72 276.2 232 54.7
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 5.7e-72 275.0 162 84.6
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.7e-71 272.3 267 57.7
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 4.5e-61 238.8 135 83.7
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.4e-57 227.3 122 88.5
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 9.7e-56 221.1 115 93.0
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 6.1e-50 201.8 197 47.2
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 2.0e-48 196.8 101 95.0
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 7.0e-46 188.3 121 76.9
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 2.7e-45 186.4 235 44.7
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 1.7e-44 183.7 165 61.2
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 3.2e-43 179.5 100 88.0
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 4.4e-40 169.1 84 91.7
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 2.8e-39 166.4 83 89.2
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 2.9e-36 156.4 100 76.0
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 6.6e-36 155.2 84 86.9
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.5e-35 153.3 83 86.7
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 2.8e-34 149.8 97 77.3
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.4e-33 147.5 84 83.3
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.0e-33 146.4 84 82.1
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.6e-32 143.3 77 85.7
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.4e-32 142.5 84 81.0
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.2e-30 136.3 76 85.5
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.4e-30 135.6 76 85.5
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 2.0e-29 133.7 84 79.8
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.3e-28 131.0 70 87.1
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.3e-28 131.0 70 87.1
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.3e-28 131.0 70 87.1
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.3e-28 131.0 70 87.1
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.3e-28 130.2 76 81.6
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.0e-28 129.0 70 85.7
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.6e-26 124.0 70 82.9
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 8.0e-26 121.7 84 76.2
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.3e-25 120.2 71 80.3
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.1e-25 119.8 76 77.6
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.5e-11 74.3 39 89.7
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 8.9e-09 65.1 55 63.6
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 7.1e-06 55.5 29 89.7


User provided reference genes

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