Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.0e-204 716.5 355 100.0
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.3e-195 684.9 353 95.8
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 8.8e-188 660.2 353 91.8
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 3.8e-183 644.8 353 89.8
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.9e-182 642.5 353 89.5
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.9e-182 642.5 353 89.5
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.2e-182 641.3 353 89.2
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 3.3e-174 615.1 350 86.3
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.5e-171 606.3 347 86.5
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.9e-170 602.1 347 85.3
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 4.1e-169 598.2 351 84.9
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 9.2e-169 597.0 347 84.4
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.2e-168 596.7 353 83.3
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.2e-168 596.7 353 83.9
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.5e-168 595.1 350 84.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 5.0e-167 591.3 355 82.3
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.0e-167 591.3 355 83.7
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-166 590.1 347 84.1
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.5e-166 589.7 355 83.4
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.5e-166 589.0 354 82.2
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 9.5e-166 587.0 348 83.6
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 4.0e-164 581.6 355 82.5
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.0e-163 579.3 346 81.8
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.9e-162 575.5 347 81.3
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.1e-161 573.5 346 81.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.9e-161 572.8 346 82.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 4.1e-161 571.6 346 80.9
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.1e-160 569.3 351 80.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 6.0e-160 567.8 354 77.7
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 7.8e-160 567.4 347 82.4
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.1e-159 564.7 351 80.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 8.6e-159 563.9 352 80.1
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.5e-158 562.4 367 77.4
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.2e-157 557.8 332 83.1
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 5.2e-156 554.7 356 78.7
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 8.9e-156 553.9 328 84.1
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-155 553.5 382 73.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.6e-155 552.4 332 82.5
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.6e-155 552.4 358 77.7
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 3.4e-155 552.0 351 78.1
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 7.5e-155 550.8 352 78.1
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.7e-154 549.7 352 76.4
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.9e-154 548.9 354 77.1
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 8.3e-154 547.4 357 77.3
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.9e-153 546.2 347 78.1
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-152 543.5 359 74.7
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.1e-152 542.7 364 74.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.1e-152 542.7 349 77.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 4.6e-152 541.6 327 80.7
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 7.8e-152 540.8 351 76.6
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.3e-151 540.0 351 75.8
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.7e-151 539.7 349 77.1
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.3e-151 539.3 351 75.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.0e-151 538.9 380 71.3
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 6.6e-151 537.7 355 74.9
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.1e-150 537.0 351 74.6
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.5e-150 536.6 354 76.6
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 4.3e-150 535.0 350 76.9
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 9.5e-150 533.9 354 74.9
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 9.5e-150 533.9 349 75.1
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.6e-149 531.9 353 74.8
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.8e-148 529.6 354 75.4
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.1e-148 528.9 345 75.1
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.1e-148 528.9 351 74.6
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.2e-148 528.1 347 74.9
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.2e-147 526.9 323 78.9
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.2e-147 526.9 357 75.4
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.5e-147 526.6 315 83.5
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.0e-147 526.2 351 75.5
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.3e-146 523.5 354 74.0
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.2e-146 522.7 348 76.4
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.8e-146 521.9 346 75.1
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 8.4e-146 520.8 328 78.0
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.1e-145 520.4 347 74.1
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 6.0e-144 514.6 409 66.7
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.7e-143 513.1 352 73.6
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.0e-143 512.3 333 76.0
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.0e-143 512.3 326 77.3
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.0e-143 512.3 327 75.8
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 3.6e-141 505.4 326 77.0
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 3.6e-141 505.4 355 72.1
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.8e-140 503.1 351 71.8
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 4.0e-140 501.9 326 74.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.5e-139 500.0 328 74.4
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.0e-139 499.6 326 75.5
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 2.0e-139 499.6 326 73.0
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.9e-139 497.3 324 75.9
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 2.2e-138 496.1 323 74.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.2e-138 496.1 348 73.0
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 6.4e-138 494.6 341 72.7
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.4e-137 492.7 319 74.3
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 4.2e-137 491.9 319 74.6
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 5.4e-137 491.5 323 73.4
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 5.4e-137 491.5 320 74.1
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.4e-137 491.5 326 74.5
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 7.1e-137 491.1 319 73.7
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 7.1e-137 491.1 320 74.1
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 9.3e-137 490.7 347 71.8
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.2e-136 490.3 320 74.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.6e-136 490.0 329 74.5
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.6e-136 490.0 319 73.7
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.7e-136 489.2 319 74.0
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 2.7e-136 489.2 319 74.0
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 3.5e-136 488.8 342 69.9
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.3e-135 486.9 320 73.4
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.7e-135 486.5 320 73.4
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.3e-135 486.1 319 73.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.0e-135 485.7 333 71.5
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 5.1e-135 485.0 343 72.9
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 8.7e-135 484.2 341 71.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 4.3e-134 481.9 342 71.3
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 5.6e-134 481.5 326 73.3
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.1e-133 479.6 361 68.4
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.1e-132 475.7 305 76.7
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 6.9e-132 474.6 347 70.0
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.0e-131 473.0 363 65.8
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 4.5e-131 471.9 324 69.8
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.3e-130 470.3 307 75.2
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.7e-130 469.9 273 85.0
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.9e-130 469.2 322 72.7
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 6.4e-130 468.0 351 66.7
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 6.0e-128 461.5 307 74.3
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 8.7e-127 457.6 335 68.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 5.6e-126 454.9 274 83.6
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 7.4e-126 454.5 324 70.4
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.3e-125 453.8 319 68.7
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.5e-123 445.3 354 66.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 7.1e-121 438.0 524 48.1
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 6.0e-120 434.9 284 78.2
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 3.3e-118 429.1 265 80.8
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 4.1e-108 395.6 322 64.0
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.5e-99 367.1 227 80.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 2.0e-99 366.7 351 55.0
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 8.5e-98 361.3 333 56.2
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 3.3e-94 349.4 280 66.4
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.7e-93 347.1 242 69.4
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.8e-90 335.9 206 80.1
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.5e-90 335.1 229 72.5
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.5e-86 323.9 290 56.6
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.6e-86 323.2 267 64.4
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.3e-85 320.9 204 78.4
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 3.7e-85 319.3 230 70.9
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.1e-80 302.0 188 79.3
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 8.3e-77 291.6 162 88.9
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 2.9e-66 256.5 371 42.0
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 8.6e-66 255.0 186 66.7
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 2.6e-62 243.4 212 61.3
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.6e-62 243.4 186 67.7
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.8e-61 240.0 166 72.3
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.4e-60 235.7 164 70.1
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.8e-55 220.7 143 74.1
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 2.0e-54 217.2 269 47.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 3.5e-51 206.5 202 56.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 7.3e-49 198.7 336 40.5
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 5.1e-42 176.0 120 76.7
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 8.9e-31 138.7 126 54.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.2e-28 129.8 259 37.5
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 6.0e-27 125.9 222 38.3
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 2.3e-26 124.0 71 87.3
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 6.6e-26 122.5 377 30.2
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 7.3e-25 119.0 71 81.7
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.8e-21 106.7 214 36.9
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.6e-19 101.3 60 85.0
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.6e-19 101.3 65 72.3
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.5e-17 94.7 91 54.9
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.9e-17 94.4 57 78.9
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 6.9e-15 85.9 77 51.9
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.3e-10 71.6 50 64.0
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 2.8e-08 63.9 59 55.9
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 3.7e-08 63.5 57 57.9


User provided reference genes

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