Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 0.0e+00 1235.7 763 100.0
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.8e-271 938.7 771 74.6
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 6.1e-218 761.5 800 62.9
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 2.9e-151 540.0 688 55.8
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 6.0e-141 505.8 676 54.9
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 4.0e-137 493.0 671 52.9
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.3e-135 488.0 679 51.7
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.8e-135 486.5 666 54.5
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.1e-134 485.0 671 53.9
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 3.3e-131 473.4 749 50.6
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 6.4e-127 459.1 805 44.7
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 4.6e-125 453.0 773 48.4
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 5.1e-116 422.9 790 45.4
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 3.1e-113 413.7 787 41.9
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 7.6e-112 409.1 773 47.6
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 7.6e-112 409.1 435 54.7
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 9.6e-107 392.1 794 43.1
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 3.7e-106 390.2 756 45.6
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.4e-102 378.3 501 47.7
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.4e-102 378.3 501 47.7
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 4.6e-101 373.2 417 53.2
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 7.9e-101 372.5 503 45.9
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.8e-100 371.3 776 41.2
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.1e-99 368.6 768 42.2
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.3e-98 365.2 699 39.3
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.2e-98 364.4 768 42.2
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 3.1e-97 360.5 761 43.6
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.0e-95 355.5 801 43.4
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 1.4e-94 351.7 481 46.6
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.6e-93 348.2 509 47.3
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 3.6e-93 347.1 505 47.3
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 6.1e-93 346.3 422 51.7
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 7.9e-93 345.9 447 48.1
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 3.3e-91 340.5 513 45.0
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 4.3e-91 340.1 424 50.0
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 3.7e-90 337.0 362 55.5
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.4e-89 335.1 512 45.3
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.1e-89 334.0 428 50.5
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 3.1e-89 334.0 441 49.4
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 3.4e-88 330.5 353 55.8
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 1.0e-87 328.9 405 48.4
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 2.2e-87 327.8 354 55.9
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 6.5e-87 326.2 653 43.2
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 5.5e-86 323.2 488 44.5
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 7.2e-86 322.8 374 53.2
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 2.1e-85 321.2 379 52.2
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 6.1e-85 319.7 411 46.7
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.4e-84 318.5 492 43.3
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.8e-84 318.2 462 45.5
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 2.6e-83 314.3 521 44.0
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.3e-83 313.9 768 38.5
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 7.4e-83 312.8 508 41.3
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 7.4e-83 312.8 487 43.1
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 1.3e-82 312.0 855 37.8
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 1.7e-82 311.6 539 42.5
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 2.8e-82 310.8 447 44.1
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 2.4e-81 307.8 499 42.9
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 5.3e-81 306.6 678 43.5
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 5.9e-80 303.1 529 42.3
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 2.2e-79 301.2 367 51.2
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 2.9e-79 300.8 441 47.4
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 3.8e-79 300.4 664 42.9
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 3.8e-79 300.4 396 49.0
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 2.7e-77 294.3 457 44.2
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 3.6e-77 293.9 537 41.7
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 8.0e-77 292.7 534 41.6
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.0e-75 288.1 517 42.6
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 3.3e-75 287.3 355 48.7
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 7.5e-75 286.2 417 45.6
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 7.5e-75 286.2 417 45.6
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 9.7e-75 285.8 458 44.1
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 1.7e-74 285.0 407 45.9
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 1.1e-73 282.3 243 61.3
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 1.8e-73 281.6 475 41.5
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 7.0e-73 279.6 702 40.5
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.2e-72 278.9 535 41.9
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 3.5e-72 277.3 454 43.8
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 7.7e-72 276.2 368 48.4
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 1.0e-71 275.8 362 48.1
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.0e-71 275.8 427 46.6
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 5.0e-71 273.5 335 49.0
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 8.5e-71 272.7 308 51.0
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 2.5e-70 271.2 433 43.2
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 5.5e-70 270.0 438 43.8
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 2.7e-69 267.7 415 46.5
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 2.7e-69 267.7 539 42.3
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 4.7e-69 266.9 345 49.0
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.2e-67 262.3 359 48.5
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.0e-67 261.5 366 47.0
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 2.6e-67 261.2 362 50.0
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 4.4e-67 260.4 423 46.1
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 7.5e-67 259.6 256 55.5
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 1.7e-66 258.5 256 55.9
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 8.3e-66 256.1 439 44.2
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 1.4e-65 255.4 460 41.7
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 1.8e-65 255.0 379 46.2
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 1.8e-65 255.0 422 45.0
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.4e-65 254.6 418 44.3
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 3.5e-64 250.8 429 44.1
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 6.5e-63 246.5 415 42.9
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 8.5e-63 246.1 378 45.5
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 1.5e-62 245.4 365 47.9
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.5e-62 245.4 455 40.9
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 3.2e-62 244.2 298 51.7
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 3.2e-62 244.2 298 51.7
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 5.5e-62 243.4 464 39.2
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.6e-61 241.9 443 42.4
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 2.7e-61 241.1 418 40.7
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 8.8e-60 236.1 420 43.6
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 7.5e-59 233.0 368 42.9
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 3.7e-58 230.7 200 61.5
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 4.9e-58 230.3 426 41.8
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 3.1e-57 227.6 357 44.0
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.6e-56 225.3 411 42.8
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 2.0e-56 224.9 414 40.6
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 1.0e-55 222.6 426 39.0
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 2.5e-54 218.0 175 62.9
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 9.5e-54 216.1 414 39.4
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.6e-53 214.2 314 44.6
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 4.7e-53 213.8 358 44.1
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 8.0e-53 213.0 418 36.4
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 3.0e-52 211.1 458 37.1
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 5.2e-52 210.3 240 49.6
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 5.2e-52 210.3 450 36.0
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.5e-51 208.8 459 37.7
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 5.7e-51 206.8 217 52.5
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.4e-49 202.2 182 56.6
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 1.2e-48 199.1 307 41.4
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 7.8e-48 196.4 413 38.5
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.3e-47 195.7 241 46.1
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 4.1e-41 174.1 187 49.7
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.3e-39 169.1 425 36.5
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 8.6e-39 166.4 213 45.1
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 2.5e-38 164.9 308 40.3
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 8.9e-36 156.4 245 43.3
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 3.4e-35 154.5 219 42.0
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.3e-34 152.5 203 42.4
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 6.4e-34 150.2 149 51.0
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 1.1e-33 149.4 232 41.8
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.2e-32 146.0 136 50.7
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 6.8e-28 130.2 97 71.1
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 1.7e-26 125.6 144 53.5
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 7.1e-25 120.2 144 52.8
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.5e-22 111.7 326 35.0
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 3.0e-15 88.2 67 59.7
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 2.8e-13 81.6 64 60.9
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 1.1e-12 79.7 119 34.5
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 4.5e-11 74.3 240 28.8
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 6.0e-08 63.9 100 35.0
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.3e-07 62.8 94 40.4
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 1.9e-06 58.9 102 37.3


User provided reference genes

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