Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1029600 Malus domestica HOM05D002668 ORTHO05D247985 3.4e-52 208.0 100 100.0
QL02p074872 Quercus lobata HOM05D002668 ORTHO05D003295 5.3e-13 77.8 92 45.7
ClCG10G013950 Citrullus lanatus HOM05D002668 ORTHO05D003295 1.5e-12 76.3 93 47.3
Sed0003940 Sechium edule HOM05D002668 ORTHO05D003295 3.4e-12 75.1 93 46.2
MELO3C009987.2 Cucumis melo HOM05D002668 ORTHO05D003295 5.8e-12 74.3 93 45.2
CsaV3_3G042740 Cucumis sativus L. HOM05D002668 ORTHO05D003295 5.8e-12 74.3 93 45.2
Rhsim10G0018000 Rhododendron simsii HOM05D002668 ORTHO05D003295 1.0e-11 73.6 93 45.2
vmacro05859 Vaccinium macrocarpon HOM05D002668 ORTHO05D003295 1.0e-11 73.6 93 45.2
MD09G1028100 Malus domestica HOM05D002668 ORTHO05D003295 1.7e-11 72.8 91 45.1
TPR.G1093 Trifolium pratense HOM05D002668 ORTHO05D003295 1.7e-11 72.8 94 43.6
CANSAT64G0004 Cannabis sativa HOM05D002668 ORTHO05D003295 2.2e-11 72.4 94 43.6
Gohir.D10G086800 Gossypium hirsutum HOM05D002668 ORTHO05D003295 2.2e-11 72.4 93 45.2
Gorai.011G095000 Gossypium raimondii HOM05D002668 ORTHO05D003295 2.2e-11 72.4 93 45.2
Lj7A598T51 Lonicera japonica HOM05D002668 ORTHO05D003295 2.2e-11 72.4 93 44.1
MBI10_g39275_MAGBIO Magnolia biondii HOM05D002668 ORTHO05D003295 2.2e-11 72.4 93 46.2
GSVIVG01032417001 Vitis vinifera HOM05D002668 ORTHO05D003295 2.2e-11 72.4 93 44.1
DCAR_015059 Daucus carota HOM05D002668 ORTHO05D003295 2.9e-11 72.0 93 44.1
Dinv35102 Davidia involucrata HOM05D002668 ORTHO05D003295 2.9e-11 72.0 93 44.1
CiPaw.03G042700 Carya illinoinensis HOM05D002668 ORTHO05D003295 3.8e-11 71.6 93 44.1
Lj1g0015456 Lotus japonicus HOM05D002668 ORTHO05D003295 3.8e-11 71.6 93 43.0
Actinidia36111 Actinidia chinensis HOM05D002668 ORTHO05D003295 4.9e-11 71.2 93 43.0
Migut.K01391 Erythranthe guttata HOM05D002668 ORTHO05D003295 4.9e-11 71.2 92 44.6
Gohir.A10G102600 Gossypium hirsutum HOM05D002668 ORTHO05D003295 4.9e-11 71.2 93 44.1
Lalb_Chr14g0362731 Lupinus albus HOM05D002668 ORTHO05D003295 4.9e-11 71.2 93 43.0
Potri.001G345900 Populus trichocarpa HOM05D002668 ORTHO05D003295 4.9e-11 71.2 91 45.1
Cc07_g01790 Coffea canephora HOM05D002668 ORTHO05D003295 6.5e-11 70.9 93 43.0
RcHm_v2.0_Chr2g0172941 Rosa chinensis HOM05D002668 ORTHO05D003295 6.5e-11 70.9 91 44.0
arahy.Tifrunner.gnm1.ann1.GU90BI Arachis hypogaea HOM05D002668 ORTHO05D003295 8.4e-11 70.5 93 41.9
Cfa007377 Carpinus fangiana HOM05D002668 ORTHO05D003295 8.4e-11 70.5 93 41.9
Haze_14731 Corylus avellana HOM05D002668 ORTHO05D003295 8.4e-11 70.5 93 41.9
Lsat_1_v5_gn_4_183381 Lactuca sativa HOM05D002668 ORTHO05D003295 8.4e-11 70.5 93 45.2
Nn3g16754 Nelumbo nucifera HOM05D002668 ORTHO05D003295 8.4e-11 70.5 93 44.1
Prupe.3G290600 Prunus persica HOM05D002668 ORTHO05D003295 1.1e-10 70.1 91 44.0
Duzib147G1250 Durio zibethinus HOM05D002668 ORTHO05D003295 1.4e-10 69.7 90 42.2
FvH4_6g51320 Fragaria vesca HOM05D002668 ORTHO05D003295 1.4e-10 69.7 91 42.9
FAN05G4386 Fragaria x ananassa HOM05D002668 ORTHO05D003295 1.4e-10 69.7 91 42.9
FAN09G3109 Fragaria x ananassa HOM05D002668 ORTHO05D003295 1.4e-10 69.7 91 42.9
FAN14G0265 Fragaria x ananassa HOM05D002668 ORTHO05D003295 1.4e-10 69.7 91 42.9
Manes.17G112900 Manihot esculenta HOM05D002668 ORTHO05D003295 1.4e-10 69.7 91 44.0
Oeu048624.1 Olea europaea HOM05D002668 ORTHO05D003295 1.4e-10 69.7 94 42.6
Solyc12g035360.2 Solanum lycopersicum HOM05D002668 ORTHO05D003295 1.4e-10 69.7 93 44.1
Sopen12g015070 Solanum pennellii HOM05D002668 ORTHO05D003295 1.4e-10 69.7 93 44.1
Nitab4.5_0000419g0100 Nicotiana tabacum HOM05D002668 ORTHO05D003295 1.9e-10 69.3 93 44.1
SGA_v2.0_scaffold224G42983 Striga asiatica HOM05D002668 ORTHO05D003295 1.9e-10 69.3 91 44.0
Hma1.2p1_1291F.1_g273510 Hydrangea macrophylla HOM05D002668 ORTHO05D003295 2.5e-10 68.9 93 43.0
Phvul.008G144400 Phaseolus vulgaris HOM05D002668 ORTHO05D003295 2.5e-10 68.9 93 40.9
Aqoxy3G01155 Aquilegia oxysepala HOM05D002668 ORTHO05D003295 3.2e-10 68.6 93 41.9
Glyma.19G063300 Glycine max HOM05D002668 ORTHO05D003295 3.2e-10 68.6 93 41.9
HanXRQChr09g0255121 Helianthus annuus HOM05D002668 ORTHO05D003295 3.2e-10 68.6 93 44.1
Medtr6g007797 Medicago truncatula HOM05D002668 ORTHO05D003295 3.2e-10 68.6 94 40.4
PGR083G1667 Punica granatum HOM05D002668 ORTHO05D003295 3.2e-10 68.6 93 40.9
SalBow7G4293 Salvia bowleyana HOM05D000795 ORTHO05D003295 3.2e-10 68.6 93 39.8
CSS0029758 Camellia sinensis var. sinensis HOM05D002668 ORTHO05D003295 4.2e-10 68.2 91 41.8
Ca_08361_v3 Cicer arietinum L. HOM05D002668 ORTHO05D003295 4.2e-10 68.2 93 40.9
Psat3g163200 Pisum sativum HOM05D002668 ORTHO05D003295 4.2e-10 68.2 93 40.9
Eucgr.J02235 Eucalyptus grandis HOM05D002668 ORTHO05D003295 7.1e-10 67.4 93 41.9
Nitab4.5_0002385g0020 Nicotiana tabacum HOM05D002668 ORTHO05D003295 7.1e-10 67.4 93 43.0
Os05g0543300 Oryza sativa ssp. japonica HOM05D002668 ORTHO05D003295 7.1e-10 67.4 90 42.2
Peaxi162Scf00700g00428 Petunia axillaris HOM05D002668 ORTHO05D003295 7.1e-10 67.4 93 43.0
Thecc.04G016000 Theobroma cacao HOM05D002668 ORTHO05D003295 7.1e-10 67.4 93 41.9
TWI56G0497 Tripterygium wilfordii HOM05D002668 ORTHO05D003295 7.1e-10 67.4 93 39.8
TAR622G0975 Trochodendron aralioides HOM05D002668 ORTHO05D003295 7.1e-10 67.4 90 42.2
Potri.017G071900 Populus trichocarpa HOM05D002668 ORTHO05D003295 9.3e-10 67.0 93 41.9
ECA232G4013 Erigeron canadensis HOM05D002668 ORTHO05D003295 1.2e-09 66.6 93 43.0
VMungo1383G2954 Vigna mungo HOM05D002668 ORTHO05D003295 1.2e-09 66.6 93 39.8
Zm00001eb294550 Zea mays HOM05D002668 ORTHO05D003295 2.1e-09 65.9 90 41.1
Zm00001eb342540 Zea mays HOM05D002668 ORTHO05D003295 2.1e-09 65.9 90 40.0
Atru.chr6.2283 Acer truncatum HOM05D002668 ORTHO05D003295 2.7e-09 65.5 91 41.8
Ciclev10015851m.g Citrus clementina HOM05D002668 ORTHO05D003295 2.7e-09 65.5 91 42.9
Glyma.16G071900 Glycine max HOM05D002668 ORTHO05D003295 2.7e-09 65.5 93 39.8
CDE06G0738 Ceratophyllum demersum HOM05D002668 ORTHO05D003295 4.6e-09 64.7 93 40.9
AUR62035476 Chenopodium quinoa HOM05D002668 ORTHO05D003295 4.6e-09 64.7 91 41.8
PSO017G1194 Papaver somniferum HOM05D002668 ORTHO05D003295 4.6e-09 64.7 90 45.6
PSO478G0575 Papaver somniferum HOM05D002668 ORTHO05D003295 4.6e-09 64.7 90 45.6
ATR0585G146 Amborella trichopoda HOM05D002668 ORTHO05D003295 1.8e-08 62.8 93 40.9
A02p02600 Brassica napus HOM05D002668 ORTHO05D003295 2.3e-08 62.4 93 38.7
BcaNung03148 Brassica carinata HOM05D002668 ORTHO05D003295 3.0e-08 62.0 93 38.7
BcaC03g13471 Brassica carinata HOM05D002668 ORTHO05D003295 3.9e-08 61.6 93 38.7
C02p07080 Brassica napus HOM05D002668 ORTHO05D003295 3.9e-08 61.6 93 38.7
BolC2t06641H Brassica oleracea HOM05D002668 ORTHO05D003295 3.9e-08 61.6 93 38.7
Thhalv10014091m.g Eutrema salsugineum HOM05D002668 ORTHO05D003295 3.9e-08 61.6 93 38.7
Sp6g29480 Schrenkiella parvula HOM05D002668 ORTHO05D003295 3.9e-08 61.6 93 38.7
AL6G25280 Arabidopsis lyrata HOM05D002668 ORTHO05D003295 8.7e-08 60.5 93 37.6
AT5G14530 Arabidopsis thaliana HOM05D002668 ORTHO05D003295 8.7e-08 60.5 93 37.6
Carub.0006s1271 Capsella rubella HOM05D002668 ORTHO05D003295 8.7e-08 60.5 93 37.6
Aa31LG11G15300 Aethionema arabicum HOM05D002668 ORTHO05D003295 1.1e-07 60.1 93 37.6
THA.LOC104822400 Tarenaya hassleriana HOM05D002668 ORTHO05D003295 1.1e-07 60.1 93 37.6
BraA02t05228Z Brassica rapa HOM05D002668 ORTHO05D003295 3.3e-07 58.5 93 37.6
Pp3c19_4130 Physcomitrium patens HOM05D002668 ORTHO05D003295 6.2e-06 54.3 93 36.6


User provided reference genes

Program Settings