Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 2.4e-289 998.0 478 100.0
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 1.4e-273 945.7 478 93.3
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 6.2e-261 903.7 478 89.7
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 1.2e-259 899.4 479 88.3
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 6.4e-258 893.6 478 88.3
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.1e-257 890.2 482 88.0
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 9.2e-257 889.8 479 87.1
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.1e-256 888.6 479 88.1
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 3.5e-256 887.9 481 88.1
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 1.0e-255 886.3 478 87.2
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 3.9e-255 884.4 478 86.6
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.5e-254 882.5 478 86.2
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 3.3e-254 881.3 476 87.0
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 7.3e-254 880.2 479 86.2
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 9.6e-254 879.8 477 86.6
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.2e-253 879.4 476 86.8
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.1e-252 876.3 481 86.9
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.1e-252 876.3 481 86.9
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.1e-252 876.3 481 86.1
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.8e-252 875.5 479 86.6
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 5.2e-252 874.0 476 86.3
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 5.2e-252 874.0 476 85.9
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 6.8e-252 873.6 480 85.4
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.6e-251 871.7 474 87.1
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 3.4e-251 871.3 481 86.7
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 4.4e-251 870.9 478 86.2
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 7.6e-251 870.2 480 85.2
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 1.3e-250 869.4 479 85.6
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.7e-250 869.0 479 85.4
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 1.7e-250 869.0 459 88.2
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 4.9e-250 867.5 478 84.3
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 8.4e-250 866.7 493 82.6
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 3.2e-249 864.8 479 84.8
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 5.4e-249 864.0 486 84.4
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 9.3e-249 863.2 478 84.3
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 9.3e-249 863.2 480 84.8
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.6e-248 862.4 483 84.5
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 7.8e-248 860.1 479 85.0
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 1.0e-247 859.8 478 84.1
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.3e-247 859.4 476 84.0
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.3e-247 859.4 479 83.9
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.7e-247 859.0 476 83.8
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.7e-247 859.0 479 85.8
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.0e-247 858.2 475 83.8
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 3.9e-247 857.8 478 83.3
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 3.9e-247 857.8 484 84.1
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 3.9e-247 857.8 477 84.1
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 5.1e-247 857.4 480 84.4
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.5e-246 855.9 477 83.6
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.9e-246 855.5 480 84.4
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 9.6e-246 853.2 477 82.8
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.6e-245 852.4 479 83.3
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 2.8e-245 851.7 478 82.6
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 3.6e-245 851.3 479 83.3
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 3.6e-245 851.3 476 83.8
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 4.8e-245 850.9 479 83.9
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 6.2e-245 850.5 491 84.1
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 8.1e-245 850.1 478 82.8
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.4e-244 849.4 473 84.4
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.4e-244 849.4 479 83.7
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.8e-244 849.0 472 84.1
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 1.8e-244 849.0 474 83.3
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 3.1e-244 848.2 479 83.3
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 4.0e-244 847.8 444 88.7
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 5.3e-244 847.4 472 84.3
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 5.3e-244 847.4 472 83.9
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 9.0e-244 846.7 442 88.5
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.2e-243 846.3 474 82.9
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 1.2e-243 846.3 479 83.1
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.2e-243 846.3 479 85.0
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 1.2e-243 846.3 479 82.3
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 3.4e-243 844.7 477 84.7
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 4.4e-243 844.3 473 83.7
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 5.8e-243 844.0 480 82.7
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 7.6e-243 843.6 476 84.7
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 7.6e-243 843.6 479 83.7
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 7.6e-243 843.6 486 81.9
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 9.9e-243 843.2 479 83.3
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.7e-242 842.4 477 83.2
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 2.2e-242 842.0 479 82.5
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 8.4e-242 840.1 480 82.5
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.9e-241 839.0 479 83.3
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 2.4e-241 838.6 480 83.3
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 4.2e-241 837.8 481 82.1
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 4.2e-241 837.8 472 82.8
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 2.1e-240 835.5 481 81.5
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 7.8e-240 833.6 474 83.5
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 7.8e-240 833.6 479 81.8
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 1.0e-239 833.2 479 83.1
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.0e-239 833.2 479 82.7
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.0e-239 833.2 480 81.9
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 1.3e-239 832.8 478 83.1
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 2.5e-238 828.6 476 81.9
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 9.6e-238 826.6 462 83.3
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 2.4e-236 822.0 456 83.8
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 4.0e-236 821.2 506 78.1
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 1.3e-231 806.2 480 78.8
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.5e-230 802.0 501 79.2
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 4.3e-230 801.2 504 77.4
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 7.6e-227 790.4 476 78.6
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 7.1e-225 783.9 506 76.5
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.8e-223 779.2 476 78.6
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 3.1e-220 768.5 454 80.8
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 6.5e-218 760.8 479 76.6
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 2.5e-217 758.8 479 76.8
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.5e-211 739.6 499 74.5
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.7e-210 736.1 480 75.0
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 1.6e-208 729.6 469 72.5
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 5.7e-206 721.1 384 86.7
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 1.1e-204 716.8 447 74.0
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 3.4e-203 711.8 444 75.5
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 5.0e-202 708.0 445 73.7
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 9.1e-196 687.2 484 70.7
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 3.5e-187 658.7 464 70.3
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 6.3e-181 637.9 368 79.3
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 4.5e-179 631.7 456 68.9
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 7.7e-179 630.9 368 78.8
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.1e-172 610.5 480 65.4
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 4.3e-153 545.4 407 68.3
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 4.7e-152 542.0 306 84.6
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 9.8e-150 534.3 304 80.6
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 4.0e-143 512.3 304 78.6
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 5.8e-142 508.4 281 85.1
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 6.4e-141 505.0 275 85.8
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 3.2e-140 502.7 410 61.0
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 3.0e-138 496.1 451 54.1
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 9.0e-127 458.0 308 71.8
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 7.1e-108 395.2 254 74.0
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.3e-104 384.4 211 85.3
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 5.0e-101 372.5 200 91.5
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 3.2e-100 369.8 228 75.4
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 3.2e-100 369.8 228 75.4
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 9.3e-100 368.2 417 48.9
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 5.5e-92 342.4 464 44.8
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 7.0e-79 298.9 428 43.2
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 5.2e-74 282.7 149 85.2
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 2.0e-70 270.8 180 71.1
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.3e-69 268.1 180 70.6
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.4e-66 258.1 172 72.1
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 6.8e-66 255.8 172 71.5
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 5.2e-50 203.0 99 90.9
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 5.2e-50 203.0 99 90.9
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 7.0e-47 192.6 111 80.2
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.6e-38 163.3 95 86.3
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.7e-37 161.4 105 71.4
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 1.5e-36 158.3 97 75.3
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 1.4e-34 151.8 77 88.3
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 1.1e-31 142.1 92 76.1
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 5.4e-31 139.8 77 84.4
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 1.0e-21 109.0 66 72.7
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.7e-21 108.2 56 85.7
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.9e-20 104.8 133 42.1
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 5.8e-17 93.2 72 65.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 5.8e-17 93.2 72 65.3
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 1.1e-15 89.0 45 84.4
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 6.0e-14 83.2 72 62.5
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 2.3e-13 81.3 76 51.3
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 8.7e-13 79.3 46 78.3
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 5.3e-10 70.1 34 88.2
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 1.3e-08 65.5 35 85.7
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 2.2e-08 64.7 34 85.3
Lsat_1_v5_gn_9_37000 Lactuca sativa HOM05D004186 ORTHO05D011383 1.9e-07 61.6 58 56.9
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 2.4e-07 61.2 56 55.4
C08p17140 Brassica napus HOM05D004186 ORTHO05D011383 7.1e-07 59.7 56 53.6
BolC8t49341H Brassica oleracea HOM05D004186 ORTHO05D011383 7.1e-07 59.7 56 53.6
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 3.5e-06 57.4 56 53.6
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 3.5e-06 57.4 56 53.6
BcaC07g38783 Brassica carinata HOM05D002592 ORTHO05D011383 4.6e-06 57.0 49 57.1
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 4.6e-06 57.0 56 51.8
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 4.6e-06 57.0 56 51.8
BolC7t45165H Brassica oleracea HOM05D001159 ORTHO05D011383 7.9e-06 56.2 56 53.6


User provided reference genes

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