Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 3.1e-128 461.8 236 100.0
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 4.2e-101 371.7 233 81.5
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 2.3e-91 339.3 236 75.4
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 2.8e-73 279.3 238 65.1
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 2.1e-68 263.1 238 60.5
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 5.2e-59 231.9 215 59.5
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 1.3e-54 217.2 238 51.7
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 6.8e-51 204.9 237 48.5
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 1.5e-50 203.8 237 52.3
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 4.4e-50 202.2 225 48.9
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 2.2e-49 199.9 228 49.1
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 8.3e-49 198.0 228 48.2
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 2.4e-48 196.4 235 48.9
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 5.4e-48 195.3 234 48.7
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 9.1e-48 194.5 218 50.9
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 3.5e-47 192.6 237 46.8
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 2.5e-45 186.4 237 47.3
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 3.2e-45 186.0 245 43.3
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 4.7e-44 182.2 236 45.3
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 6.1e-44 181.8 215 48.4
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 2.3e-43 179.9 236 44.9
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 3.0e-43 179.5 236 45.8
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 5.2e-43 178.7 211 46.0
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 5.2e-43 178.7 235 46.4
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 8.8e-43 177.9 235 45.5
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 1.5e-42 177.2 213 47.9
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 4.4e-42 175.6 245 44.9
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 4.4e-42 175.6 213 47.4
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 5.7e-42 175.3 235 47.7
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 5.7e-42 175.3 231 46.8
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 7.5e-42 174.9 229 46.3
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 2.8e-41 172.9 186 50.0
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 2.8e-41 172.9 230 44.3
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 3.7e-41 172.6 185 52.4
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 8.3e-41 171.4 224 45.5
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 2.4e-40 169.9 226 43.4
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 5.4e-40 168.7 219 47.0
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 3.8e-38 162.5 151 57.6
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 3.8e-38 162.5 222 43.7
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 1.5e-37 160.6 250 40.4
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 1.9e-37 160.2 223 43.0
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 5.6e-37 158.7 202 45.5
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 9.5e-37 157.9 211 43.1
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 9.5e-37 157.9 223 43.5
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 1.2e-36 157.5 233 43.3
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 1.2e-36 157.5 182 50.0
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 3.6e-36 156.0 225 43.6
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 4.7e-36 155.6 177 50.3
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 1.0e-35 154.5 208 45.2
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 1.8e-35 153.7 239 42.3
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.8e-35 153.7 211 42.7
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 5.2e-35 152.1 217 44.2
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 6.8e-35 151.8 183 49.7
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 6.8e-35 151.8 223 44.4
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 8.9e-35 151.4 206 45.6
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 8.9e-35 151.4 207 44.9
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 2.0e-34 150.2 205 41.5
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 2.6e-34 149.8 215 44.2
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 2.6e-34 149.8 220 43.6
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 4.4e-34 149.1 218 43.6
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 2.2e-33 146.7 225 40.9
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 3.7e-33 146.0 213 43.7
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 3.7e-33 146.0 206 44.2
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 4.9e-33 145.6 215 41.9
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 6.4e-33 145.2 180 42.8
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 1.1e-32 144.4 208 44.7
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 1.1e-32 144.4 184 45.1
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.4e-32 144.1 223 41.3
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 1.4e-32 144.1 183 43.2
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 3.2e-32 142.9 209 41.6
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 5.4e-32 142.1 221 43.0
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 1.2e-31 141.0 208 43.8
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 1.2e-31 141.0 237 40.1
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 3.5e-31 139.4 251 37.5
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 4.6e-31 139.0 206 43.7
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 4.6e-31 139.0 237 39.7
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 5.9e-31 138.7 184 42.9
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 7.8e-31 138.3 203 43.8
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 1.0e-30 137.9 186 45.7
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 1.0e-30 137.9 208 39.4
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 1.7e-30 137.1 186 45.2
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 2.3e-30 136.7 214 42.5
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 3.0e-30 136.3 208 43.8
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 3.0e-30 136.3 208 43.8
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 3.0e-30 136.3 208 43.8
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 3.0e-30 136.3 260 37.3
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 8.6e-30 134.8 215 41.4
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.1e-28 130.2 237 38.8
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 3.6e-28 129.4 185 43.8
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 4.7e-28 129.0 191 43.5
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 4.7e-28 129.0 227 37.4
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 8.0e-28 128.3 204 38.2
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 8.9e-27 124.8 238 35.7
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 1.1e-24 117.9 212 38.7
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 9.2e-24 114.8 115 53.0
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 9.2e-24 114.8 155 46.5
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 1.1e-21 107.8 105 54.3
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 1.9e-21 107.1 159 39.0
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 2.5e-21 106.7 210 36.2
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 1.4e-19 100.9 185 37.8
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 1.2e-18 97.8 164 37.8
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 4.4e-18 95.9 137 44.5
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 7.8e-15 85.1 119 43.7
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 2.1e-12 77.0 186 33.3
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 4.0e-11 72.8 222 31.1
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 6.8e-11 72.0 217 32.3
Os01g0773800 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D049898 1.6e-07 60.8 196 27.6
MELO3C015488.2 Cucumis melo HOM05D004059 ORTHO05D004591 3.5e-07 59.7 142 33.8
Sed0008144 Sechium edule HOM05D004059 ORTHO05D004591 4.6e-07 59.3 69 47.8
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 7.8e-07 58.5 130 36.2
Hund25946 Selenicereus undatus HOM05D004059 ORTHO05D004591 7.8e-07 58.5 91 41.8
Oeu017604.1 Olea europaea HOM05D004059 ORTHO05D004591 1.0e-06 58.2 140 32.1
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 2.3e-06 57.0 61 52.5
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 3.0e-06 56.6 138 34.8
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 3.9e-06 56.2 109 33.9
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 5.1e-06 55.8 61 50.8
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 6.6e-06 55.5 127 37.0
CsaV3_1G040580 Cucumis sativus L. HOM05D004059 ORTHO05D004591 8.6e-06 55.1 72 45.8
Nitab4.5_0002593g0060 Nicotiana tabacum HOM05D004059 ORTHO05D004591 8.6e-06 55.1 109 33.9


User provided reference genes

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