Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1196600 Malus domestica HOM05D006687 ORTHO05D008379 2.3e-240 835.1 413 100.0
MD13G1196100 Malus domestica HOM05D006687 ORTHO05D008379 6.0e-228 793.9 413 94.4
Prupe.1G016800 Prunus persica HOM05D006687 ORTHO05D008379 3.3e-218 761.5 413 91.8
RcHm_v2.0_Chr4g0415641 Rosa chinensis HOM05D006687 ORTHO05D008379 5.6e-202 707.6 413 85.2
FvH4_4g16100 Fragaria vesca HOM05D006687 ORTHO05D008379 3.2e-197 691.8 415 83.6
FAN07G2338 Fragaria x ananassa HOM05D006687 ORTHO05D008379 1.7e-195 686.0 417 83.5
FAN12G1590 Fragaria x ananassa HOM05D006687 ORTHO05D008379 1.6e-193 679.5 438 79.2
FAN22G0081 Fragaria x ananassa HOM05D006687 ORTHO05D008379 6.2e-193 677.6 418 82.3
FAN17G0837 Fragaria x ananassa HOM05D006687 ORTHO05D008379 2.0e-191 672.5 415 82.2
MELO3C006520.2 Cucumis melo HOM05D006687 ORTHO05D008379 8.4e-190 667.2 418 78.9
ClCG05G005070 Citrullus lanatus HOM05D006687 ORTHO05D008379 1.4e-189 666.4 418 78.9
CsaV3_3G013130 Cucumis sativus L. HOM05D006687 ORTHO05D008379 1.4e-189 666.4 418 78.9
CANSAT78G1673 Cannabis sativa HOM05D006687 ORTHO05D008379 4.8e-185 651.4 417 78.7
Sed0004090 Sechium edule HOM05D006687 ORTHO05D008379 3.5e-180 635.2 419 76.1
Sed0025649 Sechium edule HOM05D006687 ORTHO05D008379 3.3e-178 628.6 417 75.8
Nn1g02367 Nelumbo nucifera HOM05D006687 ORTHO05D008379 6.2e-177 624.4 416 75.5
Manes.15G030400 Manihot esculenta HOM05D006687 ORTHO05D008379 1.4e-176 623.2 426 73.5
COL.COLO4_21511 Corchorus olitorius HOM05D006687 ORTHO05D008379 1.8e-176 622.9 421 75.3
Aqoxy2G03421 Aquilegia oxysepala HOM05D006687 ORTHO05D008379 2.6e-175 619.0 416 75.5
Thecc.04G234600 Theobroma cacao HOM05D006687 ORTHO05D008379 1.0e-174 617.1 421 75.3
Duzib052G0918 Durio zibethinus HOM05D006687 ORTHO05D008379 1.7e-174 616.3 421 74.1
PSO761G0513 Papaver somniferum HOM05D006687 ORTHO05D008379 2.9e-174 615.5 415 74.2
CiPaw.01G168400 Carya illinoinensis HOM05D006687 ORTHO05D008379 3.8e-174 615.1 416 75.7
PSO210G5270 Papaver somniferum HOM05D006687 ORTHO05D008379 3.8e-174 615.1 415 74.0
TAR636G0889 Trochodendron aralioides HOM05D006687 ORTHO05D008379 1.1e-173 613.6 416 75.0
Gohir.D02G039900 Gossypium hirsutum HOM05D006687 ORTHO05D008379 1.4e-173 613.2 421 74.1
Gohir.A02G033400 Gossypium hirsutum HOM05D006687 ORTHO05D008379 4.2e-173 611.7 421 73.4
Gorai.005G044200 Gossypium raimondii HOM05D006687 ORTHO05D008379 4.2e-173 611.7 421 73.9
TWI53G1185 Tripterygium wilfordii HOM05D006687 ORTHO05D008379 5.5e-173 611.3 418 73.9
Haze_00870 Corylus avellana HOM05D006687 ORTHO05D008379 7.2e-173 610.9 427 73.8
Atru.chr4.2438 Acer truncatum HOM05D006687 ORTHO05D008379 1.6e-172 609.8 421 72.7
Cpa.g.sc58.86 Carica papaya HOM05D006687 ORTHO05D008379 1.6e-172 609.8 424 72.2
arahy.Tifrunner.gnm1.ann1.S3TICT Arachis hypogaea HOM05D006687 ORTHO05D008379 3.5e-172 608.6 427 72.6
arahy.Tifrunner.gnm1.ann1.SVC7LK Arachis hypogaea HOM05D006687 ORTHO05D008379 4.6e-172 608.2 423 73.5
CSS0011956 Camellia sinensis var. sinensis HOM05D006687 ORTHO05D008379 3.9e-171 605.1 413 74.3
THA.LOC104808559 Tarenaya hassleriana HOM05D006687 ORTHO05D008379 1.9e-170 602.8 416 71.9
CSS0001912 Camellia sinensis var. sinensis HOM05D006687 ORTHO05D008379 3.3e-170 602.1 413 74.1
LjContig00222g0006058 Lotus japonicus HOM05D006687 ORTHO05D008379 2.4e-168 595.9 413 72.9
Dinv44552 Davidia involucrata HOM05D006687 ORTHO05D008379 9.0e-168 594.0 422 72.3
Sabra08G0118100 Salix brachista HOM05D006687 ORTHO05D008379 2.6e-167 592.4 413 72.4
Lalb_Chr05g0211161 Lupinus albus HOM05D006687 ORTHO05D008379 4.5e-167 591.7 413 72.2
Actinidia23525 Actinidia chinensis HOM05D006687 ORTHO05D008379 5.9e-167 591.3 413 73.1
Aa31LG8G9120 Aethionema arabicum HOM05D006687 ORTHO05D008379 5.9e-167 591.3 416 71.4
Potri.010G085500 Populus trichocarpa HOM05D006687 ORTHO05D008379 5.9e-167 591.3 420 70.5
Sc13g0004520 Simmondsia chinensis HOM05D006687 ORTHO05D008379 2.2e-166 589.3 421 70.8
Glyma.11G008100 Glycine max HOM05D006687 ORTHO05D008379 5.0e-166 588.2 413 71.7
PGR004G1051 Punica granatum HOM05D006687 ORTHO05D008379 2.5e-165 585.9 412 73.8
CARHR098480 Cardamine hirsuta HOM05D006687 ORTHO05D008379 4.2e-165 585.1 417 70.3
CDE05G2168 Ceratophyllum demersum HOM05D006687 ORTHO05D008379 4.2e-165 585.1 419 69.9
QL06p001782 Quercus lobata HOM05D006687 ORTHO05D008379 5.5e-165 584.7 419 71.6
Sp3g20360 Schrenkiella parvula HOM05D006687 ORTHO05D008379 1.2e-164 583.6 416 70.2
AT3G22590 Arabidopsis thaliana HOM05D006687 ORTHO05D008379 3.6e-164 582.0 417 69.3
Carub.0003s2274 Capsella rubella HOM05D006687 ORTHO05D008379 3.6e-164 582.0 416 69.2
Thhalv10020820m.g Eutrema salsugineum HOM05D006687 ORTHO05D008379 4.6e-164 581.6 416 70.0
AL3G36890 Arabidopsis lyrata HOM05D006687 ORTHO05D008379 7.9e-164 580.9 416 69.2
Phvul.002G042300 Phaseolus vulgaris HOM05D006687 ORTHO05D008379 3.9e-163 578.6 413 70.9
VMungo1215G0895 Vigna mungo HOM05D006687 ORTHO05D008379 3.3e-162 575.5 415 71.6
Psat2g189880 Pisum sativum HOM05D006687 ORTHO05D008379 2.4e-160 569.3 413 70.2
BraA05t21491Z Brassica rapa HOM05D006687 ORTHO05D008379 5.3e-160 568.2 417 69.1
A05p26080 Brassica napus HOM05D006687 ORTHO05D008379 1.2e-159 567.0 417 69.1
BcaB06g26371 Brassica carinata HOM05D006687 ORTHO05D008379 1.5e-159 566.6 414 69.3
Ciclev10005124m.g Citrus clementina HOM05D006687 ORTHO05D008379 2.0e-159 566.2 421 69.1
BcaC05g28033 Brassica carinata HOM05D006687 ORTHO05D008379 4.5e-159 565.1 422 68.5
C05p40480 Brassica napus HOM05D006687 ORTHO05D008379 4.5e-159 565.1 422 68.5
BolC5t32790H Brassica oleracea HOM05D006687 ORTHO05D008379 4.5e-159 565.1 422 68.5
TPR.G37926 Trifolium pratense HOM05D006687 ORTHO05D008379 1.0e-158 563.9 413 70.0
CAN.G231.10 Capsicum annuum HOM05D006687 ORTHO05D008379 3.8e-158 562.0 413 69.5
Nitab4.5_0000321g0170 Nicotiana tabacum HOM05D006687 ORTHO05D008379 1.9e-157 559.7 413 69.7
Ca_24424_v3 Cicer arietinum L. HOM05D006687 ORTHO05D008379 3.2e-157 558.9 413 70.2
Medtr5g006960 Medicago truncatula HOM05D006687 ORTHO05D008379 9.4e-157 557.4 416 70.2
Lsat_1_v5_gn_6_103081 Lactuca sativa HOM05D006687 ORTHO05D008379 5.7e-154 548.1 416 69.2
Lj3A732T77 Lonicera japonica HOM05D006687 ORTHO05D008379 5.7e-154 548.1 414 67.6
Solyc06g054080.3 Solanum lycopersicum HOM05D006687 ORTHO05D008379 7.7e-151 537.7 413 67.1
Sopen06g019240 Solanum pennellii HOM05D006687 ORTHO05D008379 7.7e-151 537.7 413 67.1
PGSC0003DMG400016264 Solanum tuberosum HOM05D006687 ORTHO05D008379 2.2e-150 536.2 413 66.8
Hund10579 Selenicereus undatus HOM05D006687 ORTHO05D008379 1.1e-149 533.9 415 65.8
Ah.13g071710 Amaranthus hybridus HOM05D006687 ORTHO05D008379 9.7e-146 520.8 412 65.0
HanXRQChr11g0327791 Helianthus annuus HOM05D006687 ORTHO05D008379 4.8e-145 518.5 402 68.7
Oeu042805.1 Olea europaea HOM05D006687 ORTHO05D008379 6.3e-145 518.1 410 66.8
AUR62034718 Chenopodium quinoa HOM05D006687 ORTHO05D008379 9.1e-144 514.2 415 64.6
ECA246G3355 Erigeron canadensis HOM05D006687 ORTHO05D008379 3.5e-143 512.3 417 65.2
SalBow2G2000 Salvia bowleyana HOM05D006687 ORTHO05D008379 3.5e-143 512.3 413 65.9
AUR62033670 Chenopodium quinoa HOM05D006687 ORTHO05D008379 1.7e-142 510.0 421 63.7
SGA_v2.0_scaffold191G40505 Striga asiatica HOM05D006687 ORTHO05D008379 2.2e-142 509.6 415 65.8
EL10Ac3g06489 Beta vulgaris HOM05D006687 ORTHO05D008379 5.0e-142 508.4 412 63.8
Migut.G00354 Erythranthe guttata HOM05D006687 ORTHO05D008379 8.5e-142 507.7 419 65.2
GSVIVG01018007001 Vitis vinifera HOM05D006687 ORTHO05D008379 8.5e-142 507.7 413 65.9
Hma1.2p1_1572F.1_g291370 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 2.1e-140 503.1 417 64.7
Actinidia40137 Actinidia chinensis HOM05D006687 ORTHO05D008379 1.7e-137 493.4 409 65.5
ATR0665G006 Amborella trichopoda HOM05D006687 ORTHO05D008379 1.6e-135 486.9 481 58.0
DCAR_024171 Daucus carota HOM05D006687 ORTHO05D008379 1.6e-135 486.9 385 68.1
Sc13g0006070 Simmondsia chinensis HOM05D006687 ORTHO05D008379 1.3e-134 483.8 362 68.0
Peaxi162Scf00131g00127 Petunia axillaris HOM05D006687 ORTHO05D008379 6.5e-134 481.5 407 63.4
unitig_749.g14072 Utricularia gibba HOM05D006687 ORTHO05D008379 4.2e-133 478.8 412 62.6
Cc03_g04010 Coffea canephora HOM05D006687 ORTHO05D008379 1.7e-121 440.3 413 58.4
Eucgr.H03443 Eucalyptus grandis HOM05D006687 ORTHO05D008379 5.9e-119 431.8 258 84.1
Potri.008G155000 Populus trichocarpa HOM05D006687 ORTHO05D008379 5.6e-117 425.2 257 82.9
SEGI_38182 Sequoiadendron giganteum HOM05D006687 ORTHO05D008379 4.1e-112 409.1 470 49.6
Rhsim04G0200900 Rhododendron simsii HOM05D006687 ORTHO05D008379 6.6e-110 401.7 261 77.4
HPP92_018620 Vanilla planifolia HOM05D006687 ORTHO05D008379 6.4e-105 385.2 241 80.1
Mapoly0001s0040 Marchantia polymorpha HOM05D006687 ORTHO05D008379 1.1e-99 367.9 465 44.1
Zm00001eb217880 Zea mays HOM05D006687 ORTHO05D008379 9.9e-98 361.3 419 48.4
Hma1.2p1_1572F.1_g291380 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 1.2e-95 354.4 259 73.0
Hma1.2p1_2201F.1_g317030 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 5.6e-93 345.5 246 74.0
Os03g0664700 Oryza sativa ssp. japonica HOM05D006687 ORTHO05D008379 2.1e-92 343.6 415 48.4
Pp3c6_19770 Physcomitrium patens HOM05D006687 ORTHO05D008379 3.4e-90 336.3 464 43.3
AagrBONN_evm.TU.Sc2ySwM_344.3801 Anthoceros agrestis HOM05D006687 ORTHO05D008379 3.0e-78 296.6 436 42.2
Dinv14009 Davidia involucrata HOM05D006687 ORTHO05D008379 7.1e-72 275.4 282 55.7
TAR365G0539 Trochodendron aralioides HOM05D006687 ORTHO05D008379 7.1e-72 275.4 184 76.1
CBR_g48312 Chara braunii HOM05D006687 ORTHO05D008379 1.1e-45 188.3 193 48.2
Oeu042804.1 Olea europaea HOM05D006687 ORTHO05D008379 9.4e-40 168.7 178 50.6
PRCOL_00002517 Prasinoderma coloniale HOM05D006687 ORTHO05D008379 8.2e-36 155.6 481 27.4
Cre02.g104550 Chlamydomonas reinhardtii HOM05D006687 ORTHO05D008379 1.2e-34 151.8 489 26.4
Dinv10241 Davidia involucrata HOM05D006687 ORTHO05D008379 1.0e-33 148.7 200 46.5
MCO02G458 Micromonas commoda HOM05D006687 ORTHO05D008379 5.0e-33 146.4 463 27.9
Rhsim04G0201000 Rhododendron simsii HOM05D001311 ORTHO05D001204 4.2e-32 143.3 110 60.9
MD09G1133500 Malus domestica HOM05D006687 ORTHO05D008379 9.1e-27 125.6 98 68.4
HanXRQChr12g0381471 Helianthus annuus HOM05D006687 ORTHO05D008379 1.6e-26 124.8 158 46.8
MD13G1132600 Malus domestica HOM05D006687 ORTHO05D008379 5.9e-26 122.9 70 85.7
vmacro02845 Vaccinium macrocarpon HOM05D006687 ORTHO05D008379 2.3e-14 84.3 145 37.2


User provided reference genes

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