Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 7.7e-158 560.5 288 100.0
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.6e-142 509.6 288 92.0
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 3.8e-112 408.7 288 78.5
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 3.0e-109 399.1 292 74.7
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 6.6e-109 397.9 292 75.3
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 7.3e-108 394.4 287 75.6
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 9.6e-108 394.0 289 74.4
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.1e-107 392.9 293 75.8
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.1e-107 392.9 293 76.1
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 8.1e-107 391.0 286 75.5
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 8.1e-107 391.0 293 74.4
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 1.5e-105 386.7 255 78.8
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.5e-105 386.7 291 73.5
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 2.0e-105 386.3 289 75.1
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 2.0e-105 386.3 265 78.5
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 2.6e-105 386.0 289 73.7
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 5.8e-105 384.8 288 74.3
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 9.9e-105 384.0 265 75.1
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 1.7e-104 383.3 287 73.5
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.7e-104 383.3 283 74.6
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.2e-104 382.9 287 74.2
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.2e-104 382.9 281 74.4
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 3.8e-104 382.1 224 87.9
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.9e-104 381.7 283 73.9
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 4.9e-104 381.7 289 72.3
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.4e-104 381.3 281 74.4
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 8.4e-104 380.9 289 73.4
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 8.4e-104 380.9 289 73.4
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.9e-103 379.8 289 73.4
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.9e-103 379.8 291 73.9
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 3.2e-103 379.0 229 85.2
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 3.2e-103 379.0 286 71.7
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 4.2e-103 378.6 220 87.3
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 4.2e-103 378.6 250 80.0
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 5.4e-103 378.3 289 72.7
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 5.4e-103 378.3 237 83.1
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 5.4e-103 378.3 291 72.5
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 9.3e-103 377.5 291 73.9
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.2e-102 377.1 291 72.5
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.7e-102 375.9 236 82.6
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 2.7e-102 375.9 256 77.7
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 4.6e-102 375.2 280 74.6
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 4.6e-102 375.2 236 82.6
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 1.3e-101 373.6 249 79.5
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.3e-101 373.6 290 72.4
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.3e-101 373.6 253 79.4
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 1.3e-101 373.6 289 71.3
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 1.7e-101 373.2 259 76.4
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 5.1e-101 371.7 292 69.9
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 6.6e-101 371.3 218 86.7
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 8.7e-101 370.9 289 71.3
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 8.7e-101 370.9 228 84.6
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 8.7e-101 370.9 290 69.7
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 1.1e-100 370.5 289 72.3
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.1e-100 370.5 277 71.8
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 1.9e-100 369.8 288 69.4
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.9e-100 369.8 288 72.9
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.5e-100 369.4 258 76.4
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 3.3e-100 369.0 237 80.2
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 3.3e-100 369.0 254 76.8
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 4.3e-100 368.6 226 83.6
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 5.6e-100 368.2 266 72.2
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 9.6e-100 367.5 225 82.2
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.3e-99 367.1 281 69.0
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.3e-99 367.1 214 86.9
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.3e-99 367.1 293 70.0
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.3e-99 367.1 293 69.6
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.6e-99 366.7 265 74.3
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.6e-99 366.7 291 70.4
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 1.6e-99 366.7 217 85.3
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.8e-99 365.9 224 83.5
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 3.6e-99 365.5 229 81.7
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 4.8e-99 365.2 198 89.9
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 4.8e-99 365.2 289 69.6
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 6.2e-99 364.8 233 81.1
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 8.1e-99 364.4 257 72.8
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.1e-98 364.0 288 69.4
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 1.4e-98 363.6 235 79.6
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.4e-98 363.6 217 84.8
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 1.4e-98 363.6 289 70.6
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.8e-98 363.2 294 68.7
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 1.8e-98 363.2 287 72.1
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 3.1e-98 362.5 226 81.4
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 5.3e-98 361.7 270 73.7
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.9e-98 361.3 267 73.8
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-97 360.5 305 66.6
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.4e-97 359.0 245 76.7
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 5.8e-97 358.2 266 72.6
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 5.8e-97 358.2 289 67.8
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 7.6e-97 357.8 265 72.1
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 9.9e-97 357.5 286 69.2
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.7e-96 356.7 266 70.7
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 2.2e-96 356.3 266 71.1
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.2e-96 356.3 235 77.4
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 2.9e-96 355.9 274 71.9
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.8e-96 355.5 278 71.6
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 8.4e-96 354.4 261 72.0
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 8.4e-96 354.4 198 88.4
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.1e-95 354.0 220 80.9
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 3.2e-95 352.4 250 75.2
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 4.2e-95 352.1 277 71.5
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 5.5e-95 351.7 302 67.2
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 7.1e-95 351.3 271 67.9
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 2.1e-94 349.7 256 73.0
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 2.7e-94 349.4 214 83.6
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 3.5e-94 349.0 198 87.4
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 3.5e-94 349.0 220 80.0
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 4.6e-94 348.6 247 71.7
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 6.0e-94 348.2 277 66.8
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.8e-93 346.7 325 61.2
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 2.3e-93 346.3 223 79.8
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 1.4e-90 337.0 235 75.7
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 4.0e-90 335.5 198 82.8
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 9.0e-90 334.3 282 68.8
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 7.6e-89 331.3 251 70.5
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 2.9e-88 329.3 241 73.4
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 3.5e-86 322.4 196 81.1
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 3.9e-85 318.9 269 68.0
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 5.7e-84 315.1 206 79.6
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 5.7e-84 315.1 166 93.4
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.6e-83 313.5 196 81.6
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 6.3e-83 311.6 262 68.7
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.8e-82 310.1 324 59.6
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.1e-82 308.9 244 69.3
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 9.0e-82 307.8 231 68.0
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 6.5e-80 301.6 280 65.0
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 7.2e-79 298.1 166 89.2
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 2.3e-77 293.1 225 66.7
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 2.3e-77 293.1 195 75.9
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 5.1e-77 292.0 155 91.0
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 2.5e-76 289.7 197 76.6
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 3.7e-75 285.8 202 71.8
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-73 280.8 293 59.4
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.6e-73 279.6 293 57.0
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 3.4e-73 279.3 235 67.7
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-72 277.3 287 59.9
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 2.2e-72 276.6 192 76.0
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 2.7e-70 269.6 198 71.2
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 5.7e-68 261.9 148 84.5
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.8e-67 259.6 159 82.4
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 4.5e-65 252.3 287 55.7
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 5.9e-65 251.9 246 62.6
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 7.7e-65 251.5 204 68.1
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.5e-63 245.4 149 81.9
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 4.4e-60 235.7 217 62.7
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 3.7e-59 232.6 167 75.4
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 6.5e-56 221.9 133 77.4
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 9.4e-55 218.0 289 41.5
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 4.7e-54 215.7 195 65.1
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.0e-48 198.0 182 63.7
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.5e-47 193.4 128 76.6
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.4e-45 187.6 351 39.9
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 3.8e-40 169.5 145 61.4
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 7.2e-39 165.2 188 44.7
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 4.4e-36 156.0 255 36.9
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.3e-32 144.4 224 41.1
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.5e-31 141.0 79 88.6
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 2.5e-23 113.6 62 87.1
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.2e-22 111.3 62 85.5
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 9.8e-20 101.7 102 59.8
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 1.3e-19 101.3 59 86.4
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.7e-14 82.8 158 41.8
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 6.8e-13 79.0 83 54.2
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 3.7e-11 73.2 118 39.0
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.4e-10 70.5 58 67.2
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 2.4e-10 70.5 40 85.0
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.4e-10 69.3 36 88.9
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 7.1e-10 68.9 40 80.0
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 4.6e-09 66.2 32 96.9
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.3e-07 59.7 42 69.0
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 7.3e-07 58.9 31 87.1
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.1e-06 57.4 34 79.4


User provided reference genes

Program Settings