Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1191700 Malus domestica HOM05D004050 ORTHO05D005162 7.3e-40 166.8 84 100.0
Haze_19347 Corylus avellana HOM05D004050 ORTHO05D005162 3.4e-29 131.3 68 95.6
Haze_19365 Corylus avellana HOM05D004050 ORTHO05D005162 3.4e-29 131.3 68 95.6
Psat3g003960 Pisum sativum HOM05D004050 ORTHO05D005162 2.2e-28 128.6 68 92.6
unitig_747.g21326 Utricularia gibba HOM05D004050 ORTHO05D005162 2.2e-28 128.6 68 91.2
Dinv32549 Davidia involucrata HOM05D004050 ORTHO05D005162 2.9e-28 128.3 68 92.6
Dinv43889 Davidia involucrata HOM05D004050 ORTHO05D005162 2.9e-28 128.3 68 92.6
Migut.B01830 Erythranthe guttata HOM05D004050 ORTHO05D005162 2.9e-28 128.3 68 89.7
Hma1.2p1_0384F.1_g140990 Hydrangea macrophylla HOM05D004050 ORTHO05D005162 2.9e-28 128.3 68 92.6
Lj1g0013952 Lotus japonicus HOM05D004050 ORTHO05D005162 3.7e-28 127.9 68 91.2
Lalb_Chr05g0217801 Lupinus albus HOM05D004050 ORTHO05D005162 3.7e-28 127.9 68 91.2
CDE10G0991 Ceratophyllum demersum HOM05D004050 ORTHO05D005162 4.9e-28 127.5 68 91.2
MSTRG.20884 Avicennia marina HOM05D004050 ORTHO05D005162 6.4e-28 127.1 68 89.7
HanXRQChr17g0562601 Helianthus annuus HOM05D004050 ORTHO05D005162 6.4e-28 127.1 68 88.2
Medtr7g116920 Medicago truncatula HOM05D004050 ORTHO05D005162 6.4e-28 127.1 68 91.2
Aqoxy7G00205 Aquilegia oxysepala HOM05D004050 ORTHO05D005162 8.3e-28 126.7 68 88.2
CiPaw.06G050500 Carya illinoinensis HOM05D004050 ORTHO05D005162 8.3e-28 126.7 68 91.2
CAN.G986.49 Capsicum annuum HOM05D004050 ORTHO05D005162 1.1e-27 126.3 68 89.7
ECA234G2549 Erigeron canadensis HOM05D004050 ORTHO05D005162 1.1e-27 126.3 68 88.2
Sopen01g039230 Solanum pennellii HOM05D004050 ORTHO05D005162 1.1e-27 126.3 68 89.7
PGSC0003DMG400000206 Solanum tuberosum HOM05D004050 ORTHO05D005162 1.1e-27 126.3 68 89.7
arahy.Tifrunner.gnm1.ann1.90L2UZ Arachis hypogaea HOM05D004050 ORTHO05D005162 1.4e-27 125.9 68 86.8
Peaxi162Scf01012g00123 Petunia axillaris HOM05D004050 ORTHO05D005162 1.4e-27 125.9 68 88.2
SalBow3G2972 Salvia bowleyana HOM05D004050 ORTHO05D005162 1.4e-27 125.9 68 89.7
TPR.G4745 Trifolium pratense HOM05D004050 ORTHO05D005162 1.4e-27 125.9 68 89.7
EL10Ac1g00318 Beta vulgaris HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 88.2
Ca_09490_v3 Cicer arietinum L. HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 88.2
Duzib138G1937 Durio zibethinus HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 89.7
Eucgr.F04376 Eucalyptus grandis HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 88.2
Gohir.A11G094100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 89.7
Gohir.D11G099100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 89.7
Gorai.007G105300 Gossypium raimondii HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 89.7
Nitab4.5_0000305g0180 Nicotiana tabacum HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 89.7
Nitab4.5_0007386g0030 Nicotiana tabacum HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 89.7
Prupe.1G011800 Prunus persica HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 91.2
QL11p030149 Quercus lobata HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 89.7
TAR636G1595 Trochodendron aralioides HOM05D004050 ORTHO05D005162 1.9e-27 125.6 68 88.2
Thecc.01G348200 Theobroma cacao HOM05D004050 ORTHO05D005162 2.4e-27 125.2 68 89.7
ATR0772G162 Amborella trichopoda HOM05D004050 ORTHO05D005162 3.2e-27 124.8 68 89.7
Rhsim07G0007400 Rhododendron simsii HOM05D004050 ORTHO05D005162 3.2e-27 124.8 68 88.2
Solyc01g095480.4 Solanum lycopersicum HOM05D004050 ORTHO05D005162 3.2e-27 124.8 68 88.2
vmacro13201 Vaccinium macrocarpon HOM05D004050 ORTHO05D005162 3.2e-27 124.8 68 88.2
Cpa.g.sc194.16 Carica papaya HOM05D004050 ORTHO05D005162 4.1e-27 124.4 68 88.2
AUR62023504 Chenopodium quinoa HOM05D004050 ORTHO05D005162 4.1e-27 124.4 68 85.3
COL.COLO4_27283 Corchorus olitorius HOM05D004050 ORTHO05D005162 4.1e-27 124.4 68 89.7
FAN07G1668 Fragaria x ananassa HOM05D004050 ORTHO05D005162 4.1e-27 124.4 68 89.7
FAN20G0802 Fragaria x ananassa HOM05D004050 ORTHO05D005162 4.1e-27 124.4 68 89.7
Sc01g0003000 Simmondsia chinensis HOM05D004050 ORTHO05D005162 4.1e-27 124.4 68 86.8
Lsat_1_v5_gn_4_33601 Lactuca sativa HOM05D004050 ORTHO05D005162 5.4e-27 124.0 68 85.3
Manes.01G249700 Manihot esculenta HOM05D004050 ORTHO05D005162 5.4e-27 124.0 68 88.2
vmacro12382 Vaccinium macrocarpon HOM05D004050 ORTHO05D005162 5.4e-27 124.0 68 88.2
GSVIVG01027043001 Vitis vinifera HOM05D004050 ORTHO05D005162 5.4e-27 124.0 68 88.2
CiPaw.05G179000 Carya illinoinensis HOM05D004050 ORTHO05D005162 7.0e-27 123.6 68 89.7
Lj9A592T69 Lonicera japonica HOM05D004050 ORTHO05D005162 7.0e-27 123.6 68 86.8
PSO063G2231 Papaver somniferum HOM05D004050 ORTHO05D005162 7.0e-27 123.6 68 85.3
PSO675G5387 Papaver somniferum HOM05D004050 ORTHO05D005162 7.0e-27 123.6 68 86.8
PSO782G0629 Papaver somniferum HOM05D004050 ORTHO05D005162 7.0e-27 123.6 68 85.3
Potri.014G094300 Populus trichocarpa HOM05D004050 ORTHO05D005162 7.0e-27 123.6 68 86.8
RcHm_v2.0_Chr6g0268411 Rosa chinensis HOM05D004050 ORTHO05D005162 7.0e-27 123.6 68 88.2
CSS0013339 Camellia sinensis var. sinensis HOM05D004050 ORTHO05D005162 9.2e-27 123.2 68 88.2
Cc02_g38930 Coffea canephora HOM05D004050 ORTHO05D005162 1.2e-26 122.9 68 83.8
FAN24G2599 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.2e-26 122.9 68 88.2
Glyma.19G252800 Glycine max HOM05D004050 ORTHO05D005162 1.2e-26 122.9 80 78.8
FvH4_4g15330 Fragaria vesca HOM05D004050 ORTHO05D005162 1.6e-26 122.5 68 86.8
FAN12G2119 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.6e-26 122.5 68 86.8
Sabra14G0068900 Salix brachista HOM05D004050 ORTHO05D005162 1.6e-26 122.5 68 85.3
Sed0000372 Sechium edule HOM05D004050 ORTHO05D005162 1.6e-26 122.5 68 85.3
Glyma.17G102000 Glycine max HOM05D004050 ORTHO05D005162 2.0e-26 122.1 68 86.8
TAR375G0239 Trochodendron aralioides HOM05D004050 ORTHO05D005162 2.0e-26 122.1 68 86.8
Nn2g12429 Nelumbo nucifera HOM05D004050 ORTHO05D005162 2.7e-26 121.7 68 88.2
FvH4_2g10710 Fragaria vesca HOM05D004050 ORTHO05D005162 3.5e-26 121.3 68 88.2
CANSAT56G4345 Cannabis sativa HOM05D004050 ORTHO05D005162 4.6e-26 120.9 68 85.3
ClCG02G014060 Citrullus lanatus HOM05D004050 ORTHO05D005162 4.6e-26 120.9 68 85.3
Ciclev10021944m.g Citrus clementina HOM05D004050 ORTHO05D005162 4.6e-26 120.9 68 86.8
PGR004G0443 Punica granatum HOM05D004050 ORTHO05D005162 6.0e-26 120.6 68 85.3
TWI14G0799 Tripterygium wilfordii HOM05D004050 ORTHO05D005162 6.0e-26 120.6 68 85.3
SGA_v2.0_scaffold5G02982 Striga asiatica HOM05D004050 ORTHO05D005162 1.7e-25 119.0 88 71.6
FAN15G2127 Fragaria x ananassa HOM05D004050 ORTHO05D005162 5.0e-25 117.5 64 90.6
THA.LOC104805548 Tarenaya hassleriana HOM05D004050 ORTHO05D005162 5.0e-25 117.5 68 85.3
SEGI_00286 Sequoiadendron giganteum HOM05D004050 ORTHO05D005162 6.6e-25 117.1 68 75.0
Phvul.006G109900 Phaseolus vulgaris HOM05D004050 ORTHO05D005162 8.6e-25 116.7 63 90.5
VMungo0540G1292 Vigna mungo HOM05D004050 ORTHO05D005162 1.5e-24 115.9 63 90.5
Sed0001564 Sechium edule HOM05D004050 ORTHO05D005162 1.9e-24 115.5 68 79.4
Aa31LG10G15380 Aethionema arabicum HOM05D004050 ORTHO05D005162 2.5e-24 115.2 69 81.2
Thhalv10006211m.g Eutrema salsugineum HOM05D004050 ORTHO05D005162 2.5e-24 115.2 69 82.6
Hund16692 Selenicereus undatus HOM05D000023 ORTHO05D005162 4.3e-24 114.4 68 79.4
MELO3C011748.2 Cucumis melo HOM05D004050 ORTHO05D005162 5.6e-24 114.0 68 77.9
A07p25630 Brassica napus HOM05D004050 ORTHO05D005162 7.3e-24 113.6 69 81.2
BolC6t37931H Brassica oleracea HOM05D004050 ORTHO05D005162 7.3e-24 113.6 69 79.7
BraA07t30204Z Brassica rapa HOM05D004050 ORTHO05D005162 7.3e-24 113.6 69 81.2
Sp5g01790 Schrenkiella parvula HOM05D004050 ORTHO05D005162 7.3e-24 113.6 69 81.2
BcaB02g07365 Brassica carinata HOM05D004050 ORTHO05D005162 9.5e-24 113.2 69 79.7
BcaC08g45143 Brassica carinata HOM05D004050 ORTHO05D005162 9.5e-24 113.2 69 79.7
C06p27620 Brassica napus HOM05D004050 ORTHO05D005162 9.5e-24 113.2 69 79.7
THA.LOC104817331 Tarenaya hassleriana HOM05D004050 ORTHO05D005162 9.5e-24 113.2 68 82.4
A09p53690 Brassica napus HOM05D004050 ORTHO05D005162 1.2e-23 112.8 69 79.7
BraA09t40791Z Brassica rapa HOM05D004050 ORTHO05D005162 1.6e-23 112.5 69 79.7
SHI28346 Sapria himalayana HOM05D004050 ORTHO05D005162 1.6e-23 112.5 68 77.9
SMO196G0022 Selaginella moellendorffii HOM05D004050 ORTHO05D005162 1.6e-23 112.5 68 77.9
BcaC07g40663 Brassica carinata HOM05D004050 ORTHO05D005162 2.1e-23 112.1 69 79.7
C08p36470 Brassica napus HOM05D004050 ORTHO05D005162 2.1e-23 112.1 69 79.7
BolC8t51230H Brassica oleracea HOM05D004050 ORTHO05D005162 2.1e-23 112.1 69 79.7
CsaV3_5G006110 Cucumis sativus L. HOM05D004050 ORTHO05D005162 2.8e-23 111.7 68 76.5
Mapoly0020s0167 Marchantia polymorpha HOM05D004050 ORTHO05D005162 3.6e-23 111.3 68 76.5
AL5G44010 Arabidopsis lyrata HOM05D004050 ORTHO05D005162 6.2e-23 110.5 70 80.0
AT3G61620 Arabidopsis thaliana HOM05D004050 ORTHO05D005162 6.2e-23 110.5 70 80.0
CARHR171930 Cardamine hirsuta HOM05D004050 ORTHO05D005162 6.2e-23 110.5 70 81.4
Carub.0005s2831 Capsella rubella HOM05D004050 ORTHO05D005162 8.1e-23 110.2 70 80.0
Carub.0006s1683 Capsella rubella HOM05D004050 ORTHO05D005162 8.1e-23 110.2 70 80.0
SGA_v2.0_scaffold548G52849 Striga asiatica HOM05D004050 ORTHO05D005162 2.3e-22 108.6 104 60.6
AagrBONN_evm.TU.Sc2ySwM_369.383 Anthoceros agrestis HOM05D004050 ORTHO05D005162 4.0e-22 107.8 83 66.3
arahy.Tifrunner.gnm1.ann1.4GFI35 Arachis hypogaea HOM05D004050 ORTHO05D005162 5.2e-22 107.5 59 86.4
Zm00001eb343390 Zea mays HOM05D004050 ORTHO05D005162 2.0e-21 105.5 70 70.0
Os09g0252000 Oryza sativa ssp. japonica HOM05D004050 ORTHO05D005162 2.6e-21 105.1 70 70.0
arahy.Tifrunner.gnm1.ann1.T01U3X Arachis hypogaea HOM05D004050 ORTHO05D005162 4.4e-21 104.4 55 89.1
Nn8g40347 Nelumbo nucifera HOM05D004050 ORTHO05D005162 1.3e-20 102.8 56 89.3
Actinidia28492 Actinidia chinensis HOM05D004050 ORTHO05D005162 1.7e-20 102.4 54 92.6
Oeu022849.2 Olea europaea HOM05D004050 ORTHO05D005162 2.9e-20 101.7 55 89.1
CBR_g46394 Chara braunii HOM05D004050 ORTHO05D005162 8.3e-20 100.1 68 67.6
MD01G1224600 Malus domestica HOM05D004050 ORTHO05D005162 1.1e-19 99.8 52 94.2
Pp3s48_50 Physcomitrium patens HOM05D004050 ORTHO05D005162 2.4e-19 98.6 67 67.2
TPR.G18216 Trifolium pratense HOM05D004050 ORTHO05D005162 6.0e-18 94.0 52 88.5
Cre06.g284500 Chlamydomonas reinhardtii HOM05D004050 ORTHO05D005162 1.3e-17 92.8 69 62.3
RcHm_v2.0_Chr4g0416511 Rosa chinensis HOM05D004050 ORTHO05D005162 2.3e-17 92.0 52 86.5
MBI07_g20436_MAGBIO Magnolia biondii HOM05D004050 ORTHO05D005162 3.9e-17 91.3 57 86.0
RcHm_v2.0_Chr7g0217091 Rosa chinensis HOM05D004050 ORTHO05D005162 8.6e-17 90.1 52 84.6
RcHm_v2.0_Chr6g0271671 Rosa chinensis HOM05D004050 ORTHO05D005162 1.5e-16 89.4 52 84.6
MBI07_g20434_MAGBIO Magnolia biondii HOM05D004050 ORTHO05D005162 5.6e-16 87.4 50 86.0
Oeu036584.1 Olea europaea HOM05D004050 ORTHO05D005162 7.3e-16 87.0 50 82.0
MCO13G612 Micromonas commoda HOM05D004050 ORTHO05D005162 9.5e-16 86.7 68 60.3
DCAR_006962 Daucus carota HOM05D004050 ORTHO05D005162 1.6e-15 85.9 50 82.0
Glyma.03G255200 Glycine max HOM05D004050 ORTHO05D005162 6.2e-15 84.0 52 76.9
CDE10G0765 Ceratophyllum demersum HOM05D004050 ORTHO05D013487 5.2e-14 80.9 54 75.9
Actinidia02806 Actinidia chinensis HOM05D004050 ORTHO05D005162 6.8e-14 80.5 68 64.7
PRCOL_00005249 Prasinoderma coloniale HOM05D004050 ORTHO05D005162 2.1e-10 68.9 54 61.1
Medtr3g072850 Medicago truncatula HOM05D004050 ORTHO05D005162 6.6e-09 63.9 34 88.2
AUR62004446 Chenopodium quinoa HOM05D004050 ORTHO05D005162 3.3e-08 61.6 68 50.0
FAN24G2737 Fragaria x ananassa HOM05D004050 ORTHO05D005162 9.6e-08 60.1 68 54.4
FvH4_2g30520 Fragaria vesca HOM05D004050 ORTHO05D005162 1.2e-07 59.7 32 87.5
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 5.2e-06 54.3 51 51.0


User provided reference genes

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