Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 1.8e-96 355.9 183 100.0
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 6.8e-67 257.7 169 81.7
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.1e-52 209.5 173 69.9
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.4e-43 180.3 177 61.0
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 7.6e-42 174.5 173 59.0
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 2.2e-41 172.9 174 58.0
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 3.8e-41 172.2 174 57.5
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 4.9e-41 171.8 173 57.8
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 4.9e-41 171.8 173 58.4
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.4e-41 171.4 169 59.2
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.1e-40 170.6 173 56.6
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.4e-40 170.2 178 53.9
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 1.4e-40 170.2 172 58.7
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 2.4e-40 169.5 176 58.0
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 5.4e-40 168.3 176 55.7
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 7.1e-40 167.9 171 55.0
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.2e-39 167.2 174 56.9
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.6e-39 166.8 171 55.0
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.6e-39 166.8 172 55.8
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 6.0e-39 164.9 172 55.2
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.3e-38 163.7 173 56.1
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.7e-38 163.3 156 57.7
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 2.3e-38 162.9 175 55.4
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.0e-38 162.5 172 56.4
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 3.9e-38 162.2 172 56.4
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 5.1e-38 161.8 165 58.2
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 6.6e-38 161.4 174 55.7
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 6.6e-38 161.4 169 57.4
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 8.7e-38 161.0 172 54.7
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 8.7e-38 161.0 194 52.1
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 8.7e-38 161.0 164 55.5
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 8.7e-38 161.0 164 55.5
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 8.7e-38 161.0 168 57.7
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.1e-37 160.6 156 59.6
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 1.1e-37 160.6 194 52.1
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.1e-37 160.6 172 54.1
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.5e-37 160.2 169 54.4
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.9e-37 159.8 164 54.9
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 2.5e-37 159.5 168 57.7
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 3.3e-37 159.1 164 58.5
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 4.3e-37 158.7 171 54.4
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 4.3e-37 158.7 194 51.5
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 4.3e-37 158.7 166 55.4
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 5.6e-37 158.3 169 56.2
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 5.6e-37 158.3 164 54.9
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 5.6e-37 158.3 164 54.9
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 7.3e-37 157.9 174 54.6
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 7.3e-37 157.9 171 53.8
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 7.3e-37 157.9 194 51.5
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 9.6e-37 157.5 165 54.5
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 9.6e-37 157.5 194 51.0
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 9.6e-37 157.5 171 54.4
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 9.6e-37 157.5 152 57.2
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 1.3e-36 157.1 166 54.2
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 1.3e-36 157.1 172 54.7
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.3e-36 157.1 189 51.9
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 2.1e-36 156.4 166 54.2
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 2.8e-36 156.0 151 57.6
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.8e-36 156.0 172 53.5
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 3.6e-36 155.6 171 53.2
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.6e-36 155.6 171 55.0
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 3.6e-36 155.6 169 52.7
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 8.1e-36 154.5 175 54.3
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 8.1e-36 154.5 169 53.3
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 8.1e-36 154.5 167 53.9
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 8.1e-36 154.5 166 53.6
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 2.4e-35 152.9 171 52.6
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.4e-35 152.9 171 52.6
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.4e-35 152.9 171 52.6
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 2.4e-35 152.9 171 52.6
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.4e-35 152.9 171 52.6
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 2.4e-35 152.9 188 50.5
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 4.0e-35 152.1 167 52.7
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.3e-35 151.8 172 53.5
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 6.9e-35 151.4 161 55.3
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 6.9e-35 151.4 190 49.5
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 9.0e-35 151.0 183 51.4
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 2.6e-34 149.4 168 52.4
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 2.6e-34 149.4 156 55.8
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 2.6e-34 149.4 154 55.8
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 3.4e-34 149.1 161 54.7
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 7.6e-34 147.9 151 57.6
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 9.9e-34 147.5 168 50.6
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.3e-33 147.1 174 51.1
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.7e-33 146.7 169 51.5
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.7e-33 146.7 185 51.4
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.9e-33 146.0 151 55.6
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 2.9e-33 146.0 167 50.9
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 4.9e-33 145.2 177 48.6
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 8.4e-33 144.4 172 51.2
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 1.1e-32 144.1 177 46.9
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.4e-32 143.7 169 51.5
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 1.9e-32 143.3 151 55.0
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.4e-32 141.7 172 52.9
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.2e-31 140.6 160 52.5
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 2.7e-31 139.4 171 50.3
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 4.6e-31 138.7 151 51.7
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 6.0e-31 138.3 124 62.1
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 6.0e-31 138.3 161 52.2
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.9e-30 135.6 185 49.2
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 6.7e-30 134.8 157 50.3
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.5e-29 133.7 171 49.1
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.5e-29 132.9 162 47.5
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 2.5e-29 132.9 113 64.6
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 3.3e-29 132.5 192 44.3
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.3e-28 130.6 168 47.6
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 4.8e-28 128.6 171 48.0
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.5e-26 123.6 153 51.0
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.9e-25 119.4 164 42.7
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.4e-24 117.1 136 49.3
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.2e-24 115.5 230 40.0
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.2e-24 115.5 219 39.3
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 6.0e-23 111.7 152 44.7
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.3e-22 110.5 119 55.5
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 3.9e-22 109.0 157 42.7
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 9.6e-21 104.4 88 64.8
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.6e-20 103.6 167 38.3
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 4.8e-20 102.1 158 39.9
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.2e-20 101.3 104 55.8
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 2.6e-18 96.3 148 36.5
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 1.9e-16 90.1 104 49.0
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 3.2e-16 89.4 99 54.5
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.2e-15 87.4 128 46.9
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 3.9e-14 82.4 107 49.5
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.3e-12 77.4 51 78.4
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 3.4e-10 69.3 101 44.6
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 4.5e-10 68.9 76 51.3
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 5.9e-10 68.6 166 31.9
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 5.9e-10 68.6 84 48.8
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 7.7e-10 68.2 166 31.9
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 2.2e-09 66.6 173 28.9
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.0e-09 65.5 63 54.0
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.2e-08 61.6 99 43.4
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 2.3e-06 56.6 80 43.8
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 5.1e-06 55.5 154 27.9
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 8.8e-06 54.7 61 52.5


User provided reference genes

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